6A6I


Conserved Protein Domain Family
CSB_WHD

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cd22254: CSB_WHD 
Click on image for an interactive view with Cn3D
winged-helix domain (WHD) found in cockayne syndrome group B (CSB) and similar proteins
CSB, also called cockayne syndrome protein CSB, DNA excision repair protein ERCC-6, ERCC Excision Repair 6, or ATP-dependent helicase ERCC6, is involved in many DNA repair processes and is essential for transcription-coupled repair (TCR). It regulates DNA double-strand break (DSB) repair and checkpoint activation. Upon DNA-binding, it locally modifies DNA conformation by wrapping the DNA around itself, thereby modifying the interface between stalled RNA polymerase II and DNA. It is required for TCR complex formation. CSB also regulates transcription and chromatin remodeling activities that are essential for neuronal differentiation and neuritogenesis. This model corresponds to the winged-helix domain (WHD) of CSB, which is involved in the recruitment of CSB to DSBs. The CSB WHD folds as a single globular domain, defining a class of ubiquitin-binding domains (UBDs) different from other UBD classes.
Statistics
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PSSM-Id: 439329
Aligned: 112 rows
Threshold Bit Score: 61.3758
Created: 13-Oct-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
ubiquitin
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:ubiquitin binding site [polypeptide binding site]
Evidence:
  • Structure:6A6I; Homo sapiens winged-helix domain of Cockayne syndrome group B protein in complex with ubiquitin, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ###  ## ##  #   ##      ##                            #                     ####
6A6I_A         25 PTTEHDDLLVEMRNFIAFQah--tDGQASTREILQEFesKLSASQSCVFRELLRNLCTFHRTSGg----EGIWKLKPEYC 98   human
XP_031024839 1264 VNESTVQLAQEIQTYLLAQp----EHVSTTGNLVSEFk-SRIKNQKEVFKKLLKNLCDFSKMTGsgnreVGIWTLKSEFS 1338 Synchytrium m...
CEL93910     1176 THSFEMEKGRELLEFFHGLga-dkNYTATTGEVLEEFgaRVPSFQKAVFKQLLKGLCTFHKSTGpt--vPGRWILKEDYR 1252 Vitrella bras...
KFG30945       48 LTFEEKKLAEEILHFFLSRpe--sDFAVTTGELLEAFapRIPTFRRKVFRAMLKELCEMVKSHDaa-hqPSYWILKPEFR 124  Toxoplasma go...
XP_004830390  767 SSQGEDEIAQDILDYFKHRk----NQSAQTGEVIQHFgpIIPESQSSIFKLLLKRICNLVKVEGg----PNYWKLKSEFV 838  Theileria equ...
XP_013229578  968 LSKEDAEMAEGLLEFLLSKkk--dNYAASTGEILEAFafRVPEHRKQVFRAILKQLCILRRSEDpe-kePSLWQLREEFR 1044 Eimeria tenella
PHJ26124     1534 VSFEDKQMASDLLHFFLSHkh--sNYAVTTGEVLEAFapRVPTFRRKIFRSLLKELCDMVKGEEtt-qtPSLWILKESFR 1610 Cystoisospora...
XP_026192669 1201 IKREEMDLAESLLAFLQSKra--eAFVATTGEILESFadKVPDHCKTLFKAILKQLCVLRRSEDpe-rePSFWQLREEFR 1277 Cyclospora ca...
XP_009010070 1077 PGHFGLELAAEIKRFVNRStysdcTHQASSEQLVKYFknKIHPSQSAIFKEILKRVCSFKKVQG-----VGVFYIKSGFK 1151 Helobdella ro...
TPX40988     1243 ANESVITLAQGIQYYLQSQp----DHLSTSNNIVNEFk-EQIKNQKEVFKKLLKNLADFTKLDGpngreIGIWTLKEEFH 1317 Synchytrium e...

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