5NFD,5D3A


Conserved Protein Domain Family
Rcc_KIF21

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cd22248: Rcc_KIF21 
regulatory coiled-coil domain found in the kinesin-like KIF21 family
The KIF21 family includes KIF21A and KIF21B. KIF21A (also called kinesin-like protein KIF2, or renal carcinoma antigen NY-REN-62) is a microtubule-binding motor protein involved in neuronal axonal transport. It works as a microtubule stabilizer that regulates axonal morphology, suppressing cortical microtubule dynamics in neurons. Mutations in KIF21A cause congenital fibrosis of the extraocular muscles type 1 (CFEOM1). In vitro, it has a plus-end directed motor activity. KIF21B is a plus-end directed microtubule-dependent motor protein which displays processive activity. It is involved in regulation of microtubule dynamics, synapse function, and neuronal morphology, including dendritic tree branching and spine formation. KIF21B plays a role in learning and memory. It is involved in the delivery of gamma-aminobutyric acid (GABA(A)) receptors to the cell surface. This model corresponds to the regulatory coiled-coil domain of KIF21A/KIF21B, which folds into an intramolecular antiparallel coiled-coil monomer in solution but crystallizes into a dimeric domain-swapped antiparallel coiled-coil.
Statistics
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PSSM-Id: 410202
Aligned: 52 rows
Threshold Bit Score: 62.6061
Created: 17-Aug-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
homodimer
Conserved site includes 37 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:5D3A: Homo sapiens KIF21A regulatory coiled-coil domain forms a homodimer; contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            ##  ## ##  ## ##  ## ##  ## ##  #             ## ##  ## ##  ## ##  ## ##  ## 
5NFD_A          1 GSMTISNMEADCNRLLKQREELTKRREKLSKRREKIvkengegdknvaNINEEMESLTANIDYINDSISDCQANIMQMEE 80   human
5D3A_A          1 GSMTISNMEADMNRLLKQREELTKRREKLSKRREKIvkengegdknvaNINEEMESLTANIDYINDSISDCQANIMQMEE 80   human
XP_019852103  935 KHQTMNLLESDLDRWLLKRDELSERSDQLKLQKETLlqated-setlaSLEEEYEALSAQINWTNDSIDKLQEEIVAFED 1013 Amphimedon qu...
KFB34942      691 ARQTVMELERELERVIQERNALSREIANVRIRKNANgesq-----alqDLVSEEDTMIANLNYLHDTVTQLQETILQVED 765  Anopheles sin...
XP_031616972  805 TKQTMFELESELERLVAERESLIKDLNAVKRRQKTEdt---------pELASEEDTLKSSLRFVQENITQVQHSIVEIED 875  swede midge
AAF63388      798 NRQLITQLEKELERLILEREDLSRELNIMENGQTADrq---------tDEFNEVDNLKTNISYIQENIEHVQQAIMEFED 868  fruit fly
XP_017099325  788 NRQMITQLEIELERKITERESLSCELNTLKSNSTRF------------DDLKEIDSIQANIDYIQEGIDHVQKAIMDFED 855  Drosophila bi...
EPB70279      891 QKQTVGKMEEELGRQLEERTRLVDEITTLERRFVQVqdvq-----ereAVADQIDGCHLKLNYVQDQITEIQTAIVDMDG 965  Ancylostoma c...
XP_030383515  799 NKQFIIQLEKELGRLITQREDLSADLGNIEKRRSSNke---------wEDSNEEDNLKINISYVQENIEHVQQAIIAFEE 869  Scaptodrosoph...
CRL00444      780 SKQAVIELERELERLLHEREQLSRDLSGVRKRQKIIes---------pELASEEDSIQANLSYIQENIEQIQNSIMELEE 850  Clunio marinus
Feature 1           
5NFD_A         81 AK 82   human
5D3A_A         81 AK 82   human
XP_019852103 1014 IK 1015 Amphimedon queenslandica
KFB34942      766 GK 767  Anopheles sinensis
XP_031616972  876 GK 877  swede midge
AAF63388      869 TK 870  fruit fly
XP_017099325  856 SK 857  Drosophila bipectinata
EPB70279      966 SK 967  Ancylostoma ceylanicum
XP_030383515  870 GK 871  Scaptodrosophila lebanonensis
CRL00444      851 GK 852  Clunio marinus

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