5B7I,5B7I,5GNF,5GQH,5GQH


Conserved Protein Domain Family
AcrIF3

?
cd22238: AcrIF3 
Anti-CRISPR type I subtype F3
AcrIF3 (also known as AcrF3) is an anti-CRISPR (Acr) protein that forms a homodimer and interacts directly with helicase-nuclease protein Cas3 and blocks its recruitment to the type I-F CRISPR-Cas surveillance complex (Csy). The type I-F Csy is a crRNA-guided surveillance complex, composed of a crRNA and nine Cas proteins (one Cas8f, one Cas5f, one Cas6f, and six Cas7f), which recruits a nuclease-helicase protein Cas3 for target degradation. Without Cas3 recruitment by the Csy-dsDNA complex, the CRISPR/Cas system is unable to efficiently destroy the invading DNA, resulting in escape from the immune response. CRISPR-Cas immune systems are used by certain prokaryotes and archaea to resist the invasion of foreign nucleic acids such as phages or plasmids. Anti-CRISPRs are small proteins which are the natural inhibitors for CRISPR-Cas systems; encoded on bacterial and archaeal viruses, they allow the virus to evade host CRISPR-Cas systems. The CRISPR-Cas-mediated adaptive immune response can be divided into three steps, including the acquisition of spacer derived from invading nucleic acids, crRNA processing, and target degradation. Theoretically, Acr proteins could suppress any step to disrupt the CRISPR-Cas system. Acr proteins are diverse with no common sequence or structural motif which inhibit a wide range of CRISPR-Cas systems with various inhibition mechanisms. CRISPR-Cas systems are divided into two classes (1 and 2) and six types (class 1: types I, III and IV; class 2: types II, V and VI). Class 1 systems utilize RNA-guided complexes consisting of multiple Cas proteins as the effector proteins to recognize and cleave target DNA. Type I CRISPR-Cas systems are the most widespread in nature, and the Cas protein composition of the employed CRISPR ribonucleoprotein (crRNP) complexes differs between seven subtypes (A to F, U). Acr families are named for their type and subtype which are numbered sequentially as they are discovered.
Links
?
Statistics
?
PSSM-Id: 412071
Aligned: 7 rows
Threshold Bit Score: 212.611
Created: 30-Sep-2020
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
 
Cas3 bindinghomodimer
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:Cas3 binding site [polypeptide binding site]
Evidence:
  • Comment:The AcrIF3 homodimer binds directly to the Cas3 nuclease and hinders its recruitment to the DNA-bound type I-F CRISPR-Cas crRNA-guided surveillance (Csy) complex.
  • Structure:5B7I; Pseudomonas phage AcrIF3 homodimer binds to Pseudomonas aeruginosa Cas3; contacts at 4A.
    View structure with Cn3D
  • Structure:5GQH: Pseudomonas phage AcrIF3 homodimer binds to Pseudomonas aeruginosa Cas3; contacts at 4A.
    View structure with Cn3D

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                      ## #   ##    ##   #        # #    
5B7I_B        24 VARSVIEAARFIQSWEDADPDSLTEDQVLAAAGFAARLHEGLQATVLQRLV-DESNHEEYREFKAWEEALLNADGRvass 102 Pseudomonas pha...
5B7I_C        24 VARSVIEAARFIQSWEDADPDSLTEDQVLAAAGFAARLHEGLQATVLQRLV-DESNHEEYREFKAWEEALLNADGRvass 102 Pseudomonas pha...
5GNF_A        11 VARSVIEAARFIQSWEDADPDSLTEDQVLAAAGFAARLHEGLQATVLQRLV-DESNHEEYREFKAWEEALLNADGRvass 89  Pseudomonas pha...
5GQH_B        10 VARSVIEAARFIQSWEDADPDSLTEDQVLAAAGFAARLHEGLQATVLQRLV-DESNHEEYREFKAWEEALLNADGRvass 88  Pseudomonas pha...
5GQH_C        10 VARSVIEAARFIQSWEDADPDSLTEDQVLAAAGFAARLHEGLQATVLQRLV-DESNHEEYREFKAWEEALLNADGRvass 88  Pseudomonas pha...
WP_126869988  10 VARSVIDAARFIQSWEDADPDSLTEDQVLAAAGFAARLHEGLQATVLQRLV-DQSNHEEYREFKAWEEALLNADGRvass 88  Pseudomonas aer...
AHH49697       2 IARSIKEANKFIQTWEEADIENLTDDQTRAAVGFASKINSELREWIRMHLDgEGTAHEEGYLKEQQAPWKKASAGDl--- 78  Pseudomonas aer...
Feature 1            #   #                ####  #            ####
5B7I_B       103 pFADWGWWYRIANVXLATASQNVGVTWGSRVHGRLXAIFQDKFKQRYE 150 Pseudomonas phage JBD5
5B7I_C       103 pFADWGWWYRIANVXLATASQNVGVTWGSRVHGRLXAIFQDKFKQRYE 150 Pseudomonas phage JBD5
5GNF_A        90 pFADWGWWYRIANVMLATASQNVGVTWGSRVHGRLMAIFQDKFKQRYE 137 Pseudomonas phage JBD5
5GQH_B        89 pFADWGWWYRIANVMLATASQNVGVTWGSRVHGRLMAIFQDKFKQRYE 136 Pseudomonas phage JBD5
5GQH_C        89 pFADWGWWYRIANVMLATASQNVGVTWGSRVHGRLMAIFQDKFKQRYE 136 Pseudomonas phage JBD5
WP_126869988  89 pFADWGWWYRIANVMLATASQNVGVTWGSRVHGRLMAIFQDKFKQRYE 136 Pseudomonas aeruginosa
AHH49697      79 -FTDFGWWHRIANLMLHTAYINHAMLGGDRYHSRLMKIFRDRFSYPED 125 Pseudomonas aeruginosa YL84

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap