6GJE,6GJE,6GJE


Conserved Protein Domain Family
cubilin_NTD

?
cd22201: cubilin_NTD 
N-terminal domain of cubilin and similar proteins
Cubilin (CUBN, also called 460 kDa receptor, intestinal intrinsic factor receptor, intrinsic factor-cobalamin receptor, or intrinsic factor-vitamin B12 receptor) is an endocytic receptor which plays a role in lipoprotein, vitamin and iron metabolism by facilitating their uptake. It acts together with the 45-kDa transmembrane protein amnionless (AMN) to mediate endocytosis of the cobalamin (vitamin B12) binding intrinsic factor (CBLIF)-cobalamin complex. This model corresponds to the N-terminal domain of cubilin, which is responsible for the interaction with AMN. The cubilin interface with AMN is formed by the N-terminal strands of three cubilin chains.
Statistics
?
PSSM-Id: 412063
Aligned: 50 rows
Threshold Bit Score: 76.2173
Created: 30-Sep-2020
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
trimertetramer
Conserved site includes 48 residues -Click on image for an interactive view with Cn3D
Feature 1:trimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                         # # # ########## ######### ######   #  ## ##  ## ##  ##         
6GJE_B          4 ELQRQKRSIn---lQQPRMATERGNLVFLTGSAQNIEFRTGSlGKIKLNDEDLSECLHQIQKNKEDIIELKgsa------ 74   human
OXU20544       24 LIINFSEGWl---dERPVLESINGNLYISSARDKNITLKTLGsGNVNINDINLLQTVWAAQNASLLVERWKvgilddves 100  Trichomalopsi...
KYB27736       10 CFYNFVFGVny-fgPQPRIVTQDGHLIFYAAVHKNISLQTQGrGKIHVNGIDLSQAAKLTNSAFDAMKKYQtnfentfe- 87   red flour beetle
XP_023717027   15 FLLEARGQVvf--dTQPRILAQDGNLVLFSGLDRNITLRTSGrGYVNLNNENLAMLAKKARTASETVEQIRtsvlvtlee 92   Cryptotermes ...
KAE9434969     16 TIASGSSPYs----DQPRLESRDGHLLIVGASGANISLQTSQgGQININDEDIIHVLNMARQAAQKVDKWGttgtggds- 90   Apolygus lucorum
XP_023335557   17 CLSQTSRDVf---nDYARIRVEGGTLILQSAENKNISFQTQGsGLVNINGEDLSRIISGARNQTFETTNTRlgerlriie 93   Eurytemora af...
XP_021001094   24 STSEQSDPFl----DRPRIVVQDGNLIFKSALNKNVSFSPSGqGIVQINNVDLSRLASAAKTVGSSQESSYaslirk--- 96   common house ...
XP_024214976   23 TKSSIYSPYn----SQARLYSEDGHLFIVGGVHSNITLKTSGnGFININDHDLLHVTELAAKSAAFVNNFKqnvlpdi-- 96   brown marmora...
XP_018570539   14 FEGAPKKSYr----QIPRLSVEDGHFIFYAAYGKNITFRTTPsAGVSINDIDILTMLNGAHNATSLVKNYQe-------- 81   Asian longhor...
KOC70062      441 CNDEITKEIceagnARPVLESRDGNLFISAAKDRNITLKILGdGYVNVNEINLLHVAETVPQQATRLIERWktgylaeve 520  Habropoda lab...
Feature 1                     ##  #  ##  #  ##  #                                                 
6GJE_B         75 ----------igLPQNISSQIYQLNSKLVDLe----------------------------------------RKFQGLQQ 104  human
OXU20544      101 t--lqrlthiveGPNGLVRKLNAIEFPGDSTvnastinrptspete------------astavsasriralsSRLRRLEN 166  Trichomalopsi...
KYB27736       88 ----kiskfeqlLDDGLMQKITTLNGRTNGTtqdgvn------------------------------saslvRSVRRLNR 133  red flour beetle
XP_023717027   93 k--vqtlfdtvlGSQGLQIKLAAVERTVRNGtvpgi-------------------------------vrplgRRVTALNM 139  Cryptotermes ...
KAE9434969     91 ----sgnpglnvFLEPLEKRLTLVEKKMSLStvdlltprrssa------------------ldtikarqgvrQRFRQLNI 148  Apolygus lucorum
XP_023335557   94 drmgdqdiniqdQFVLLERRLSLLENKTSGDisgny--------------------------------nklkNKVKRLKG 141  Eurytemora af...
XP_021001094   97 ------yaeqseTLESLTEQVNQMEENITLIynrvnkflgsgs-----------------drisnralrramAKVGVLTE 153  common house ...
XP_024214976   97 -----qssqygpLDSSVMLRLRRLEAALAGTnstisqggnt---------------------vdsrnirlltRRVNVIAR 150  brown marmora...
XP_018570539   82 ------------TFASYVERIDSLEQRVSNAqiqwnns---------------------------tdpdiirKKIRLLNV 122  Asian longhor...
KOC70062      521 s-nlqrlmqiveGPEGLERRVATIKGFGDGNstfqpenlpknqkiilkalmsdfvcrlqsnagmntkmrmvvHRIRHVED 599  Habropoda lab...
Feature 1               
6GJE_B        105 TVDKKV 110  human
OXU20544      167 KVRSIT 172  Trichomalopsis sarcophagae
KYB27736      134 RVNALQ 139  red flour beetle
XP_023717027  140 RVALLE 145  Cryptotermes secundus
KAE9434969    149 TVTRLE 154  Apolygus lucorum
XP_023335557  142 RIDELE 147  Eurytemora affinis
XP_021001094  154 KVNTLT 159  common house spider
XP_024214976  151 AVRALR 156  brown marmorated stink bug
XP_018570539  123 SIRRLH 128  Asian longhorned beetle
KOC70062      600 KVKSIE 605  Habropoda laboriosa

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap