Conserved Protein Domain Family
HMG-box_CMB1-like

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cd22014: HMG-box_CMB1-like 
high mobility group (HMG)-box found in Schizosaccharomyces pombe mismatch-binding protein cmb1 and similar proteins
Cmb1 binds to cytosines in base mismatches and opposite chemically altered guanines. It contains only one HMG-box domain.
Statistics
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PSSM-Id: 438830
Aligned: 12 rows
Threshold Bit Score: 71.246
Created: 24-Jun-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ## #####  ##      #                 ##  #  ##      #   #  #   #  #    
Q10241       147 PKKPSSAFILFYKELRNNPKLrqelgipeaistLVEETQNASKAWKELAEDKKKPFIDKSKALKEQYDKFM 217 fission yeast
XP_013020604 124 PKRPAGAFNLFLLDIMNSESLrkemgvptlspyLTENSRMVSESWKKLSEQKRQEYVKKAKDALKEYHEAL 194 Schizosaccharomyces octo...
XP_022649101 170 PSKPGNVFAFFMKESFSGQMN------------DKENLRAVADRWKNISDDKKQVYIDKAKEALMRYNHEL 228 honeybee mite
RNA05876     172 PKRPSGAFFLYCETLNRGEAN------------SKEFVRDAADKWKKMSEQDRQKFVDQANELMQQYKRDY 230 Brachionus plicatilis
NP_001078532  41 EDEPRSPFVFFLEEFRENYNGd-----------LVDASRICFNVWKNMSAEDQKPFNARAMEVDSAHSRKL 100 thale cress
CDI54737     216 PKRPNSAFFEFLNDLRASENVip---------nITEFSKRGGERWKMMSAEQKAPYEQRALQALEQYKRDL 277 Melanopsichium pennsylva...
XP_013442392  72 KSQPISPYRLFMESFMKGQDMen---------yNIELDRIGFEKWKNMSKEEKQPFVSHARELDNKHQEAL 133 barrel medic
KTB39443     215 PKRPPGPFLAYCIEFRAQNPDi----------nVTEASKLAGNQWKKLSDGEKEPYKQRFRAALEQYLTEV 275 Moniliophthora roreri
XP_020182039  12 PKRPPGSFLVFMEDHFRNEFNlknp-----nqpAGFASQAGAKQWKQMKDDEKAPFQRKVKELALEYFEKK 77  Aegilops tauschii subsp....
XP_022701824  43 PKRPRYPFLRFMLGLRQAELRnh---------pASKLSKIASVKWQQMSEDEKAPYIEEFKKENAEHRKQM 104 Varroa jacobsoni
PIC43264      93 LKYPPNSLGLWLEEVRTSEDVgk---------sVVDLSRKYGEAWRNLSEQERRPLIERARKLREMFKKQV 154 Caenorhabditis nigoni
RVX03005     144 LGEPRSPFRLFMENFRKASKTg----------nPIDVDRIGFEAWKKMSMEERKPYIIQAEKVNSEHLKIL 204 wine grape

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