Conserved Protein Domain Family
HMG-box_AtSSRP1

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cd22013: HMG-box_AtSSRP1 
high mobility group (HMG)-box found in Arabidopsis thaliana FACT complex subunit SSRP1 and similar proteins
SSRP1, also called facilitates chromatin transcription complex subunit SSRP1, high mobility group B protein 8, nucleosome/chromatin assembly factor group D 08 (or D 8), protein NUCLEAR FUSION DEFECTIVE 8, or recombination signal sequence recognition protein 1, is a component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication, and DNA repair. SSRP1 may bind specifically to double-stranded DNA. It is required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus. SSRP1 contains only one HMG-box domain.
Statistics
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PSSM-Id: 438829
Aligned: 6 rows
Threshold Bit Score: 133.06
Created: 24-Jun-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ## #####  ##      #             ##  #  ##      #   #  #   #  #         
Q05153       554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGi--AFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKN 631 thale cress
XP_024384387 575 KKEKDPNAPKRALSAFMRFQLEERKKMKADPGQasmSFGEFGKSLGEKWRNMSASDKAPYEADAKVDQERYKKAMAGYKS 654 Physcomitrella ...
O04235       550 KKKKDPNAPKRALSGFMFFSQMERENLKKTNPGi--SFTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKN 627 fava bean
EFJ34918     556 RRKKDPNAPKRALSGFMYFSLAERENLKKSTPGi--SFKDVAKTLGERWKAMSKDEKEPFESQARVDKERYTKQMQGYNK 633 Selaginella moe...
OAE25433     573 RKKKDPNAPKRGLSGFMYFSLSERENLKKSQPGl--SFIDTGKVCGDKWKKMSVDEKAPYEAKAQADKERYKRDMLEFNR 650 Marchantia poly...
GAX21600     597 KAKKDPNQPKRALSAYMFYVTKNRDKLKSEKPDl--SFGELGKELGARWKEMSAVDKAPYEAMASKDKTRYASEMKDYKP 674 Fistulifera sol...
Feature 1          
Q05153       632 PQ 633 thale cress
XP_024384387 655 GQ 656 Physcomitrella patens
O04235       628 PQ 629 fava bean
EFJ34918     634 GN 635 Selaginella moellendorffii
OAE25433     651 GG 652 Marchantia polymorpha subsp. ruderalis
GAX21600     675 TG 676 Fistulifera solaris

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