Conserved Protein Domain Family
HMG-box_AtHMGB9-like
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cd22009: HMG-box_AtHMGB9-like 
high mobility group (HMG)-box found in Arabidopsis thaliana high mobility group B protein 9 (HMGB9) and similar proteins
This subfamily contains a group of Arabidopsis thaliana HMGB family proteins, including HMGB9, 10, 11, and 15. They are DNA-binding proteins containing both HMG-box and AT-rich interaction domains. They bind preferentially to DNA with A/T-rich content. HMGB9 is required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus. Members of this subfamily have only one HMG-box domain.
Links
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Statistics
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PSSM-Id: 438825
Aligned: 8 rows
Threshold Bit Score: 92.1437
Created: 24-Jun-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1         ## #####  ##      #          ##  #  ##      #   #  #   #  #       
Q9SGS2       255 PKPNRSGYNFFFAEKHCKLKSlypnKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEY 321 thale cress
XP_023226651 145 PVGSRSPYNFFVIEKTAMTFGt---KSTETMKKIGHEWKELPEDKKEIYKRKAEEDKKRYDNEMEKW 208 bark scorpion
EFJ38629     223 PKLNRSGYNYFFAEQRAKLKLvypdKDREISKMIGETWSSMTEEQKSPYQERGVKDKERYKREISDY 289 Selaginella moellendorffii
XP_024377642 447 PRPHRTGYNFFFAEQRARLKAlhpeKDKELSRMIGDAWNNLTEEEKTLYQDRGVQDKERYKTELREY 513 Physcomitrella patens
Q9LTT3       238 PKCHRSGYNFFFAEQYARLKPeyhgQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEY 304 thale cress
ADE77776     210 PKPNRSGYNFFFAEQHARLKAlhpdKDREISKMIGELWNKLNEEERGVYQDFGLKDKERYKKEMQEY 276 Sitka spruce
Q9LG02       215 PKRQRTGYNFFVAEQSVRIKAenagQKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQY 281 thale cress
Q9MAT6       263 PKPNRSGYNFFFAEQHARLKPlhpgKDRDISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDY 329 thale cress

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