Conserved Protein Domain Family
HMG-box_AtHMGB6-like_rpt3
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cd22008: HMG-box_AtHMGB6-like_rpt3 
third high mobility group (HMG)-box found in Arabidopsis thaliana high mobility group B protein 6 (HMGB6) and similar proteins
HMGB6, also called nucleosome/chromatin assembly factor group D 06 (or D 6), WRKY transcription factor 53 (WRKY53), or WRKY DNA-binding protein 53, is a master regulator of age-induced leaf senescence. It acts in a complex transcription factor signaling network regulating senescence specific gene expression; hydrogen peroxide might be involved in signal transduction. The subfamily also includes Arabidopsis thaliana HMGB13 (also known as nucleosome/chromatin assembly factor group D 13). Both HMGB6 and HMGB13 contain three HMG-box domains. This model corresponds to the third one.
Links
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Statistics
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PSSM-Id: 438824
Aligned: 5 rows
Threshold Bit Score: 102.723
Created: 24-Jun-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                  ## #####  ##      #           ##  #  ##      #   #  #   #  #        
Q9SUP7       370 KNENVDPNKPKKPASSYFLFSKDERKKLTEerpgtnnATVTALISLKWKELSEEEKQVYNGKAAKLMEAYKKEVEAYN 447 thale cress
Q9T012       363 KNENVDPNKPKKPTSSYFLFCKDARKSVLEehpginnSTVTAHISLKWMELGEEEKQVYNSKAAELMEAYKKEVEEYN 440 thale cress
ADE77169     372 KEKNSDPNRPKKPPTSFLLFSKETRKKLVQerpgvnnTTINALISLKWKDLGTAEKQKWVDEAAGAMVQYKKEVEEYN 449 Sitka spruce
EFJ31662     338 KAKTAEPGKPKKAATAYILFGMEYRKKLQAemptakfAELTALVASKWNEMGAEEKQPYVDQAGVEKQKYQEAMEEFK 415 Selaginella moell...
XP_024380209 404 KKKAKDPNKPKKPLSSYLIFGMEMRKSLSNnqvglnfAETNAHISQKWKELSEKDKEVWNEKAAVLKKKYDADMEEYR 481 Physcomitrella pa...

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