Conserved Protein Domain Family
HMG-box_AtHMGB6-like_rpt2
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cd22007: HMG-box_AtHMGB6-like_rpt2 
second high mobility group (HMG)-box found in Arabidopsis thaliana high mobility group B protein 6 (HMGB6) and similar proteins
HMGB6, also called nucleosome/chromatin assembly factor group D 06 (or D 6), WRKY transcription factor 53 (WRKY53), or WRKY DNA-binding protein 53, is a master regulator of age-induced leaf senescence. It acts in a complex transcription factor signaling network regulating senescence specific gene expression; hydrogen peroxide might be involved in signal transduction. The subfamily also includes Arabidopsis thaliana HMGB13 (also known as nucleosome/chromatin assembly factor group D 13). Both HMGB6 and HMGB13 contain three HMG-box domains. This model corresponds to the second one.
Links
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Statistics
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PSSM-Id: 438823
Aligned: 4 rows
Threshold Bit Score: 82.3032
Created: 24-Jun-2020
Updated: 13-Oct-2021
Structure
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Aligned Rows:
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putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1         ## #####  ##      #           ##  #  ##      #   #  #   #  #       
Q9SUP7       255 PKHPVSAFLVYANERRAALREENKSv--vEVAKITGEEWKNLSdkKKAPYEKVAKKNKETYLQAMEEY 320 thale cress
Q9T012       246 PKQPISAYLIYANERRAALKGENKSv--iEVAKMAGEEWKNLSeeKKAPYDQMAKKNKEIYLQEMEGY 311 thale cress
XP_001749867 126 PKKPLTAYFLYAADRRAALRAQNRNatvaDIAKIIGAEWKDLSdaVKKPYQDRADRLKSQYQKEVELY 193 Monosiga brevicollis MX1
ETO07200     116 PPRPQSAYFLYANDRRAKLKEGNPNkkitEIAKMLGAEWKEMTpaAKKQWEEKAKGLKAAYEAKLEEY 183 Reticulomyxa filosa

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