Conserved Protein Domain Family
HMG-box_AtHMGB6-like_rpt1
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cd22006: HMG-box_AtHMGB6-like_rpt1 
first high mobility group (HMG)-box found in Arabidopsis thaliana high mobility group B protein 6 (HMGB6) and similar proteins
HMGB6, also called nucleosome/chromatin assembly factor group D 06 (or D 6), WRKY transcription factor 53 (WRKY53), or WRKY DNA-binding protein 53, is a master regulator of age-induced leaf senescence. It acts in a complex transcription factor signaling network regulating senescence specific gene expression; hydrogen peroxide might be involved in signal transduction. The subfamily also includes Arabidopsis thaliana HMGB13 (also known as nucleosome/chromatin assembly factor group D 13). Both HMGB6 and HMGB13 contain three HMG-box domains. This model corresponds to the first one.
Links
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Statistics
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PSSM-Id: 438822
Aligned: 8 rows
Threshold Bit Score: 72.4853
Created: 24-Jun-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1         ## #####  ##      #            ##  #  ##      #   #  #   #  #        
Q9SUP7        139 KRPSSSYVLWCKDQWTEVKKENPea-dFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAYLQVIAKEK 206  thale cress
EFJ31662      105 KKPLSSYFLWCNDQREKVRAQNPna-gIKDLSSIFGELWKSVSDEEKKPYEEIYQKNKEEYLKLVSKEK 172  Selaginella moellendorffii
Q9T012        130 KRPSTPYILWCKDNWNEVKKQNPea-dFKETSNILGAKWKGISAEEKKPYEEKYQADKEAYLQVITKEK 197  thale cress
ADE77169      138 KKPSPAYILWCQEQWNQVKSENPnp-vFKDMGAILGAKWKTLSAEEKKPYEEKYEAEKEAYLQVVGQER 205  Sitka spruce
AAL13284       18 KKPKTAYFLFCDEHREEAKKKAGegksASEVSKILGEMWGKLTEEQKKPYNDRYKIEMEKHKKVMDEYK 86   Naegleria fowleri
XP_024389870  145 KKPKTAFLLWCKDYRQKVCEENPna-tFAEISTILGDKWKNVPEEERKPYEDRYKVEKNVYLKLVGEER 212  Physcomitrella patens
XP_002678549  627 KKPKTSFFLYCDEYRDAVKEELGgkvaASEVAKELGARWKQLSEEEKQVYVDKHKELANEYAEKKKEIK 695  Naegleria gruberi strain...
XP_021883403   22 KRPLSAYLMYCRDNRTSVQMENQgq-kPSEVMKTLGHMWRNLSEKEKMGYSRKHSEELQKYIEKVNAFF 89   Lobosporangium transversale

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