1L8Y,1L8Z


Conserved Protein Domain Family
HMG-box_UBF1_rpt5

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cd22002: HMG-box_UBF1_rpt5 
Click on image for an interactive view with Cn3D
fifth high mobility group (HMG)-box found in upstream-binding factor 1 (UBF1) and similar proteins
UBF1, also called UBTF, nucleolar transcription factor 1, or auto-antigen NOR-90, is a nucleolar transcription factor that recognizes the ribosomal RNA gene promoter and activates transcription mediated by RNA polymerase I through cooperative interactions with the transcription factor SL1/TIF-IB complex. It binds specifically to the upstream control element. UBF1 contains six HMG-box domains. This model corresponds to the fifth one.
Statistics
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PSSM-Id: 438818
Aligned: 11 rows
Threshold Bit Score: 96.107
Created: 8-Apr-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ## #####  ##      #          ##  #  ##      #   #  #   #  #          
1L8Y_A         3 KLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAP 74   human
1L8Z_A         3 KLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAP 74   human
EMP33737     460 KLPESPKTAEEIWQQSVIGDYLARFKNDRGKALKAMEATWNNMEKKEKLMWIKKAAEDQKRFERELSEMRAP 531  Green sea turtle
XP_014347912 568 KLPETPKTAEEMWQQSIIGDYLAKYRNDRKKAQVAMEATWNAMEKKEKIPWIKKAAEDQKRYERELAEIRSP 639  coelacanth
P25980       420 KLPETPKTAEEIWQQSVIGDYLARFKNDRAKALKVMEATWLNMEKKEKIMWIKKAAEDQKRYERELSDMRST 491  African clawed frog
CAD43431     456 KLPETPKTAQEIWQQSVIGDYLARFKNDRAKAQKTMEATWNTMEKKEKIVWIKKAAEDQKRYERELSEMRSP 527  zebrafish
XP_007899718 486 KLPEPPKTAEEIWQQNVIGDYLAKFRNDRSKAIKAMESTWSAMEKKEKIVWIKKAAEDQKRYERELSELRSP 557  elephant shark
P17480       480 KLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAP 551  human
XP_023685000 471 GLPVPPKRAQDFWQLSVMESYLASFSNNRAKAEDAMNSVWISMDKKQKMVWIKKAMEDRKRYNRELGEMQPL 542  Paramormyrops kingsleyae
XP_002738418 543 RNQVLPKTPEELWIESKTEEYVQKNKVTVGKANEALKDQWARLDKASKLPWQKEAAKQKKNIERLEEIDKKI 614  Saccoglossus kowalevskii
XP_019628383 630 PPPSEARTAMELWREDKMESYVSRYRNDRKRATDALTAEWEKLPKREKQPWLQAAAEDKKRYERELAEYEKQ 701  Belcher's lancelet

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