Conserved Protein Domain Family
HMG-box_SMARCE1

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cd21983: HMG-box_SMARCE1 
high mobility group (HMG)-box found in SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 (SMARCE1) and similar proteins
SMARCE1, also called BRG1-associated factor 57 (BAF57), is a ubiquitously expressed protein involved in transcriptional activation and repression of select genes by chromatin remodeling. It is a component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner. SMARCE1 has a single HMG domain that displays non-specific DNA-binding characteristics. It also contains a kinesin-like coiled-coil (KLCC) domain.
Statistics
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PSSM-Id: 438799
Aligned: 30 rows
Threshold Bit Score: 90.048
Created: 8-Apr-2019
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             ## #####  ##      #            ##  #  ##      #   #  #   #  #        
Q969G3        62 PPKPPDKPLMPYMRYSRKVWDQVKASNPdl-klWEIGKIIGGMWRDLTDeEKQEYLNEYEAEKIEYNESMKAYH 134 human
CBY30388      44 APKMPEKPVAPFVRYSQKHWDTVKTNNPdm-rmWEISKFIARMWREAADeERETFIQAYEYEKKQYHELVKRYY 116 Oikopleura dioica
XP_024506505  26 PPKLPEKPIPPELRFKKKNFSIIRNENPni-svWEVSDILAKKWEEADDtEKMIYYQEYEREKMEYEKQMKSYY 98  Strongyloides ratti
RDD45341      80 PPKAPEKPLMPYMRYSSKMFEKVKEQHPdl-klWEIGKMIGAMWRNLDDkQKQEYFDDYEKDKRQYNESVKAYQ 152 Trichoplax sp. H2
XP_003385269  83 PPKAPEKPLLPYMRYSRKMWEHFKKSEGtdlkvWEVGKIIGQKWRELSDeDKQPYFDEYEAEKVVYDENMKAYK 156 Amphimedon queenslandica
TRY69289     284 PPRAPEKPLLPFQRFSRKVWDDVQAQHPda-slWEVGKMIGQLWRDLTDlERREINEEYEAEKQDYERQMVVYK 356 Tigriopus californicus
XP_009023611 268 KLLPPKKPLTPYMRFSKLIWQKVKLSNPgm-tvCEVGTAIGQMWREMSDgDKQTYNADFAVDKARYDDELQNYL 340 Helobdella robusta
GAU99685     157 PPKAPQKPLIPYLRFSKTVWETVRADNPgi-sfAEIGKVIGRRWRECPDdVKEKYAEEFAKDKEKYAQAQKAYL 229 Ramazzottius varieorn...
ELU01485       3 NLKPPKKPLTPYMRFSKSIWQQVKAANQgm-svCEIGATIGRMWRELGDaDKQLYNEEFNQAKVSGTLHWAVLS 75  Capitella teleta
OAO13269      22 DPDRPKKPLSPYFRYVADKRAEVKAANPdl-kmTEITKKIGDMWAQESEeVKQRYQEPYDEEKKEYDKKMEEYK 94  Blastocystis sp. ATCC...

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