Conserved Protein Domain Family
HMG-box_HMGXB3

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cd21981: HMG-box_HMGXB3 
high mobility group (HMG)-box found in HMG domain-containing protein 3 (HMGXB3) and similar proteins
HMGXB3, also called HMG box-containing protein 3, or protein SMF, is involved in DNA-damage repair and cell-cycle regulation.
Statistics
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PSSM-Id: 438797
Aligned: 6 rows
Threshold Bit Score: 152.72
Created: 9-Apr-2019
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative DNA
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                  ## #####  ##      #           ##  #  ##
Q12766        252 DGTEVTVVMEEIEeaycytspgPPKKKKKYKih----geKTKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESWR 327  human
OCT88168        6 DGTEVTVFSEEMEgsyl--sakPPLKKKKCKncae-qcdTAKKPRSAYLLYYYDIYLKVQQEIPHLPQSEINKKISESWK 82   African clawe...
CAG06281        5 QMFDIVKVTEEVEsynq--idvTTPKKRKSKevc---teKSKKPRSAYLLYYFDVHQILQQEAPNIPQSEINKRISESWK 79   spotted green...
OWK59515        6 DGAEVTVVMEEIEstytytspvPSKKKKKHKstad-pgeKAKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESWR 84   Bengalese finch
XP_005988335    6 DGTEIALVTEEVEgcftytvpaPPKKKKKIKgqge-ngeKTRKPRTAYLLYYYDTHLKVQQEFPHLPQSEINKKISESWK 84   coelacanth
XP_007900203    6 DGAEITLVTEEIEgcysctrsfPRKKKKKWKdqsedgskKGKKPRPAYLLYYYDTHLKVQQDFPNLPRSEINKKISESWR 85   elephant shark
Feature 1               #   #  #   #  #     
Q12766        328 LLSVAERSYYLEKAKLEKEGLDPNSK 353  human
OCT88168       83 LLSVAEKSHYLERAKLEKEGLDSNIK 108  African clawed frog
CAG06281       80 RLSVAEKAYYLEKAKAEKDGTDTSSL 105  spotted green pufferfish
OWK59515       85 LLSVAEKNYYLEKAKIEKEGLDPNSK 110  Bengalese finch
XP_005988335   85 CLSVAEKGYYLEKAKLEREGIDPNTR 110  coelacanth
XP_007900203   86 RLSVAEKSIYLEKAKLEKEGIDPTHK 111  elephant shark

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