6E5N,2N10,2N12,5V6E,2N0Z,2N13


Conserved Protein Domain Family
MyUb_Myo6

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cd21958: MyUb_Myo6 
Click on image for an interactive view with Cn3D
myosin VI ubiquitin-binding domain (MyUb) found in unconventional myosin-VI and similar proteins
Unconventional myosin VI, also called Myo6, or unconventional myosin-6, is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins which moves towards the plus-end of actin filaments. It is thought that myosin VI, unlike plus-end directed myosins, does not use a pure lever arm mechanism, but instead steps with a mechanism analogous to the kinesin neck-linker uncoupling model. It has been implicated in a myriad of functions including the transport of cytoplasmic organelles, maintenance of normal Golgi morphology, endocytosis, secretion, cell migration, border cell migration during development, cancer metastasis, deafness, and retinal development, among others. For example, the GIPC1 (GAIP interacting protein, C-terminus 1) adaptor protein mediates endocytosis by tethering PlexinD1, a transmembrane receptor that regulates neuronal and cardiovascular development and cargo protein of GIPC1, to myosin VI motor through a regulated oligomerization mechanism, forming a PlexinD1/GIPC/myosin VI complex. This model corresponds to the myosin VI ubiquitin-binding domain (MyUb) that binds to ubiquitin chains, especially those linked via K63, K11, and K29.
Statistics
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PSSM-Id: 439319
Aligned: 33 rows
Threshold Bit Score: 77.7977
Created: 13-Oct-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
ubiquitinclathrin
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:ubiquitin binding site [polypeptide binding site]
Evidence:
  • Structure:2N13; Homo sapiens myosin VI interacts with K63-diubiquitin, contacts at 4A
  • Comment:MyUb nestles between ubiquitins of K63-linked chains
  • Comment:This shorter construct is competent for binding ubiquitin, but not to bind optineurin, GIPC, T6BP and NDP52

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ###  ## ##### #  ##  #  ##       
6E5N_B         38 KKYDLSKWKYAELRDTINTSCDIELLAACREEFHRRLKVYH 78   Homo sapiens
2N13_A          3 KKYDLSKWKYAELRDTINTSCDIELLAACREEFHRRLKVYH 43   human
XP_001742947 1037 KRHDLSKWKYADLRDTINTSCDIDLLEACREEFHRRLKVYH 1077 Monosiga brevicollis MX1
ELT99775     1075 KKVDLSKWKYAELRDAINTSCDVEMLEACREEFHRRLKVYH 1115 Capitella teleta
XP_006813001 1032 KRYDLGKWKYAELRDAINTSCEIDMLESCREEFHRRLKVYH 1072 Saccoglossus kowalevskii
NP_999654    1062 KSLDLTTWKYADLRDTINTSIDIALLSACKEEFHRRLKVYH 1102 purple sea urchin
XP_009860375 1076 RKNDLTRWKYTELRDAINTSTDIQLLEECREEFHRRLKVYH 1116 vase tunicate
XP_019851458 1048 KSYDLTKWKYAQLRDTINTSCDIKLIEECKDELHRRLRAYH 1088 Amphimedon queenslandica
NP_490856    1033 SKYDLGNWKYADLRDAINTSNDMELLVACKEEFHRRLRIYN 1073 Caenorhabditis elegans
XP_002112451 1031 EKNDLSGYTYAQLRDIINTSCDVELLQRCREECHRRLKVYH 1071 Trichoplax adhaerens

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