5IXD


Conserved Protein Domain Family
JAK1bd_box_IFNLR1

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cd21910: JAK1bd_box_IFNLR1 
Click on image for an interactive view with Cn3D
JAK1 binding box domain found in interferon lambda receptor 1 (IFNLR1) and similar proteins
IFNLR1, also called IFN-lambda receptor 1, IFN-lambda-R1, cytokine receptor class-II member 12, cytokine receptor family 2 member 12, CRF2-12, interleukin-28 receptor subunit alpha, IL-28 receptor subunit alpha, IL-28R-alpha, IL-28RA, likely interleukin, or cytokine receptor 2 (LICR2), is a class II cytokine receptor that, together with IL10RB, forms a dimer. The IFNLR1/IL10RB dimer is a receptor for the cytokine ligands IFNL2 and IFNL3 and mediates their antiviral activity. The ligand/receptor complex stimulates the activation of the JAK/STAT signaling pathway leading to the expression of IFN-stimulated genes (ISG) which contribute to the antiviral state. IFNLR1 determines the cell type specificity of the lambda interferon action. It plays a significant role in the antiviral immune defense in the intestinal epithelium. This model corresponds to IFNLR1 box domain which consists of box1 and box2. Mutations within the box1 and box2 motifs disrupt Janus kinase (JAK) binding as well as signaling.
Statistics
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PSSM-Id: 439315
Aligned: 8 rows
Threshold Bit Score: 85.6206
Created: 18-May-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
JAK1 binding
Conserved site includes 34 residues -Click on image for an interactive view with Cn3D
Feature 1:JAK1 binding site [polypeptide binding site]
Evidence:
  • Comment:Both, box1 and box2, are involved in interactions with JAK1; some structure evidence is obtained from another structure of truncated IFNLR1 bound to JAK1
  • Structure:5IXD; Homo sapiens IFNLR1 in complex with JAK1, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #####  ######### # # ##### # ## #########    
5IXD_B         2 SKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELT 52  human
XP_001365104 245 CMCFLKKVYFQKAKMPQSLDFPGYRWPVKILELTRQESFRDLFICPKTSLE 295 gray short-tailed opossum
XP_007522647 248 WKSLSGNPWYQPAELPQALDFSGYRYSMATLQISGAESMDNLVLCPPQKLI 298 western European hedgehog
XP_012787040 298 WKNFTGSCWSERVKMPQTLDFSGHRPTVVTLPPSILESLDKLSLHPQKELS 348 European shrew
XP_012887869 259 WRNVKGNPWFKQARMPMALDFLRYRHPVVTYQPSEAESLDDLILCPAKEQL 309 Ord's kangaroo rat
XP_006883717 250 RKRPHRDSWFQQAKMPRALDFSGYTHPVPTCQPSIPEVPNALILCPQTELT 300 Cape elephant shrew
XP_024309436  48 VSRNTASSLSPPASCWRSQDFSGHTHPVATFQPSRPESVNDLFLCPQKELT 98  human
Q8IU57       249 WKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELT 299 human

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