Conserved Protein Domain Family
Rad21_Rec8_M_AtSYN1-like

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cd21793: Rad21_Rec8_M_AtSYN1-like 
Middle HEAT-repeat binding domain found in Arabidopsis thaliana sister chromatid cohesion 1 protein 1-4 (SYN1-4) and similar proteins
The family includes a group of plant chromosome cohesin proteins from the Rad21/Rec8 family, such as SYN1-4. SYN1, also called protein DETERMINATE INFERTILE 1 (DIF1), or SCC1 homolog 1, is involved in chromosome condensation, pairing, and segregation during meiosis. It is also responsible for cohesion between replicated sister chromatids. SYN4, also called AtRAD21-3, or AtRAD21.3, is involved in sister chromatid and centromere cohesion during mitosis. Similarly, SYN2 (also called SCC1 homolog 2, or AtRAD21-1) and SYN3 (also called SCC1 homolog 3, or AtRAD21-2) may also be involved in sister chromatid cohesion during mitosis. This model corresponds to a small region in the middle of SYN1-4 that shows high sequence similarity with the HEAT-repeat binding domain found in both the middle of Saccharomyces cerevisiae sister chromatid cohesion protein 1 (ScScc1p) and Homo sapiens nuclear matrix protein 1 (NXP-1), which consists of short helices and two long extended segments.
Statistics
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PSSM-Id: 439295
Aligned: 52 rows
Threshold Bit Score: 51.157
Created: 12-Mar-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative
Feature 1:putative HEAT-repeat binding site [polypeptide binding site]
Evidence:
  • Comment:based on the structure of human Scc1 in complex with HEAT-repeat containing protein Stromal Antigen 2 (SA2)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ###         ########  #  ##       ########                 #  ######       
Q8W1Y0        554 STATKRKVLM-------DDPMVLHGDIIRQQLTNT-EDIRRVRKKAPCTVpeivml---qrqalEDGLFKEPIFTgm--- 619  thale cress
KZV17293      423 KILKKRKILL-------DPTTVLPSKVLKSWIDYP-NDIIYKRRKVPHTLlqawra---nkvsrIPQCFLDPLIHnvqys 491  Dorcoceras hy...
Q9FQ20        457 RVSRKRKCLI-------DDEVIIPNKVMKEMIEDS-SKLLAKRRNVPHTDcperrt---krfanPFRSFLEPLIQyg--- 522  thale cress
KMZ75521      333 LFSRKRKCVF-------DNATILSNSAMKESIEDS-SSIVLKRRKVIHTSldvwrl---vkfcdLHKAFTEPLIPyp--- 398  Zostera marina
GER33286      424 PKILKRKSKIl-----fDETIVVSNTVFRSWIDDP-TDLKRQKKDSPHTLlhawra---rklasITQSFVEPSIPvi--- 491  Striga asiatica
KNA10763      372 QRPCKRKCMF-------DETTMFGAEIMKQVIKEA-SGLVCKRRKVPHTVidlwrf---hrisaLPKSFLEPLIPcv--- 437  spinach
TEY52871      534 TILKKRKALV-------DVGTVVPNKVLKRWIQEDpIDLKRERKNIPHTRlqawr----shkscYTHSFLEPLIPcvsvn 602  Salvia splendens
KAE9466407    405 TLRMCRKIHMll---itSFQCFHFYRLVKESIDDS-SDLVSKRKKAPYTPlhawka---hkianLPHTFLEPLFHcef-- 475  Rhododendron ...
XP_019438678  369 TRLSRKRKTI-------DKTIIISNNMLKKRVEEA-NDLVSGRRKSCPILlttqkkpctsrisvGSHVSSLPCKSs---- 436  narrow-leaved...
PUZ47749      462 EREGRRQTLHklhylymRVWRCQSSRMLREAIKDA-TDLVRKRRKAPHTRldt--------wkiRPQFLLHALVHqrhlk 532  Panicum halli...
Feature 1                    ## ######   
Q8W1Y0        620 --------svELVSLHTEPYDLR 634  thale cress
KZV17293      492 ------artrAVGIFLYKNFLCK 508  Dorcoceras hygrometricum
Q9FQ20        523 --------ssDLQSLFCQPIKLK 537  thale cress
KMZ75521      399 --------ypEFKDRTMKKYLAV 413  Zostera marina
GER33286      492 --------saDLCDLERKWSNFA 506  Striga asiatica
KNA10763      438 --------asELEFIRCRVNTER 452  spinach
TEY52871      603 l---cynscyELETLSVKPSVDQ 622  Salvia splendens
KAE9466407    476 --------slELRSLSSKKELKS 490  Rhododendron williamsianum
XP_019438678  437 ----------KIRILFSKKKLRL 449  narrow-leaved blue lupine
PUZ47749      533 ihdtgstereTILDASRRRKLDE 555  Panicum hallii var. hallii

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