6H8Q


Conserved Protein Domain Family
Rad21_Rec8_M_ScScc1p-like

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cd21791: Rad21_Rec8_M_ScScc1p-like 
Click on image for an interactive view with Cn3D
Middle HEAT-repeat binding domain found in Saccharomyces cerevisiae sister chromatid cohesion protein 1 (ScScc1p) and similar proteins
ScScc1p, also called Mcd1, or Rhc21, or Pds3, is a cleavable component of the cohesin complex involved in chromosome cohesion during the cell cycle. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At the metaphase-anaphase transition, ScScc1p is cleaved by ESP1 and dissociates from chromatin, allowing sister chromatids to segregate. This model corresponds to HEAT-repeat binding domain of ScScc1p in the middle region, which consists of short helices and two long extended segments. It is responsible for the binding of the budding yeast cohesin HEAT-repeat subunit Scc3. The Scc3-Scc1 subcomplex engages double-stranded DNA through a conserved, positively charged surface, and plays a central role in the recruitment of cohesin complexes to chromosomes and therefore for cohesin to faithfully execute its functions during cell division.
Statistics
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PSSM-Id: 439293
Aligned: 23 rows
Threshold Bit Score: 78.1241
Created: 13-Oct-2021
Updated: 13-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 41 residues -Click on image for an interactive view with Cn3D
Feature 1:putative HEAT-repeat binding site [polypeptide binding site]
Evidence:
  • Comment:based also on the structure of human Scc1 in complex with HEAT-repeat containing protein Stromal Antigen 2 (SA2)
  • Structure:6H8Q; Saccharomyces cerevisiae SCC1 in complex with HEAT-repeat protein SCC3, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             ###  ########  #  ##             ########         # ##  ######     ## #####
6H8Q_G        13 GTRRNSKLlNTKSIQIDEETENSESIa---------SSNTYKEERSnnlltpqptNFTTKRLWSEITESMs-YLPDPILK 82  Saccharomyces c...
SCW00677     318 SPKKTSALlNVKTLISDSDIELKDGTlk------neSPPPVEEVPTpaq---reiLAGSKRLWVQISENLd-YLPTSVVD 387 Lachancea ferme...
OEJ80498     342 FFSAKSILkNTKEILKDDQIEISPNEdesdnenamlRTPTNSPPRKe-------kSHGGKRLLEQMYEQTydYLPQTMYQ 414 Hanseniaspora o...
SCU84486     325 GGERASILsKTKKLLTDDATEIRDEIvka-----taSPQHGQIPESrgs---qrpQQDKKRIWTQVSEMMe-FLPGVIVN 395 Lachancea miran...
SCU80426     318 TQGLDQDLsQLKRLITDKDTELRDEEvri----sqlSPDSQIIEQHaarp--rerLNAQKRLWVQIADKTd-YLPETILG 390 Lachancea meyer...
QEU62505     340 RAPRNKAFiNVKKVLIDDDAELNDSEvkgg---psdSILIVSDESSs-------aISKKKRVIDELYSDLd-FLPQNIIS 408 Kluyveromyces l...
CUS22661     321 SRQQRADIsRLKPLIADAETELRDDIvkvs--evspNSRTIDHQQHrp-----ieNADKKRLWTQVSESId-YLPQSILG 392 Lachancea quebe...
XP_004181097 363 RHRRNSALiNVNAIQSDKDTELNQRIi--------eNRHTVKQYSDvntrrsqplQMTQKRLWTQVTDSMs-YLPTNILQ 433 Tetrapisispora ...
XP_017988270 323 KRSKNTNLiNVKRIHVDSEYELKDSVvkg-----gpSAEIISDDTLer-----siEPNKKRKWSELASAId-FLPNYSVN 391 Eremothecium si...
XP_003646869 310 RHKRNSALvNAKRLQQDEETELKEFQvkngl-ldaiSASTSTDVSN---------AFTKKRGWSELVSSMd-FLPEYSIN 378 Eremothecium cy...
Feature 1        ###         
6H8Q_G        83 NFLSYESLKKRK 94  Saccharomyces cerevisiae S288C
SCW00677     388 NLLPYHRIKKQK 399 Lachancea fermentati
OEJ80498     415 TLLQLETHLPKS 426 Hanseniaspora osmophila
SCU84486     396 NFLPYQDFKRQK 407 Lachancea mirantina
SCU80426     391 TFLSYQNLKKPR 402 Lachancea meyersii CBS 8951
QEU62505     409 NFFNHKALKRPR 420 Kluyveromyces lactis
CUS22661     393 SLLSYSSIKRAR 404 Lachancea quebecensis
XP_004181097 434 ELINSNALKRQK 445 Tetrapisispora blattae CBS 6284
XP_017988270 392 HFSPLSVYFKKA 403 Eremothecium sinecaudum
XP_003646869 379 HFSAFTFLKKQK 390 Eremothecium cymbalariae DBVPG#7215

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