Conserved Protein Domain Family
Rad21_Rec8_M_SpRad21p-like

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cd21788: Rad21_Rec8_M_SpRad21p-like 
Middle HEAT-repeat binding domain found in Schizosaccharomyces pombe cohesin subunit rad21 (SpRad21p) and similar proteins
SpRad21p, also called double-strand-break (DSB) repair protein rad21, or SCC1 homolog, is a cleavable component of the cohesin complex, involved in chromosome cohesion during the cell cycle. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. It apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At the metaphase-anaphase transition, SpRad21p is cleaved by cut1 and dissociates from chromatin, allowing sister chromatids to segregate. It is also involved in the DNA DSB repair system. This model corresponds to a small region in the middle of SpRad21p that shows high sequence similarity with the HEAT-repeat binding domain found in both Saccharomyces cerevisiae sister chromatid cohesion protein 1 (ScScc1p) and Homo sapiens nuclear matrix protein 1 (NXP-1), which consists of short helices and two long extended segments.
Statistics
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PSSM-Id: 439290
Aligned: 35 rows
Threshold Bit Score: 70.0084
Created: 17-Apr-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative
Feature 1:putative HEAT-repeat binding site [polypeptide binding site]
Evidence:
  • Comment:based on the structure of human Scc1 in complex with HEAT-repeat containing protein Stromal Antigen 2 (SA2)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             ###   ########  #  ##                  ########            #  ######      #
P30776       356 KTVRRQRAII-DPVTELSSKQMKKQLADt---sSITSPLCLNTSSIVFNATVNftrn----gkfNTSIFSSNLNPKvnEL 427 Schizosaccharom...
RPA86552     344 KRTRKRKVLV-DDVTEINGKQLKVQMSDr---sAILKDPIFLPRDPTMLSLMSlhks---gsfaTSFFYPKNIHPDlaDL 416 Ascobolus immer...
XP_023902729 322 QRVKRRKVMSqDTETELQNHQIRKQQQDt---sAITKAPSFLPRDPLLLQLMEmqrngsfvsniMGDGRLQGWAPElrGI 398 Quercus suber
CCX32637     367 TNPRKRKLII-DAITNLKTSDIRQQQEDr---sNIVKQPTFMPRDPTLLALVSlakt---gglaRSVFFPKNIAPElaNL 439 Pyronema omphal...
CCG82702     292 QAPRKRKVVE-DSATEISSRTVAANLRDt---sGIRKKQRFLDTDPVMLSLMQkslt---ggfaNDVFAPPNLNPAirSL 364 Taphrina deform...
SMR54085     315 QRVKRRRVIRmDDQTELASAQIKAQQEDh---sNITKAPSFLPRDPLLLQLMEmqrngsfvsnlMGDGRMQGWAPElrGI 391 Zymoseptoria tr...
CCJ28293     311 HQSRYKRVLE-DSAIEISSKAFSSQLRNt---sSITKQNKLLSSDPIFLTLTQlqts---gkfaTHIFEPSNVHPSivSL 383 Pneumocystis ji...
GAP83401     335 KKSKKRKVFGlDPATQLTSAHIKEQQQNh---dNILKTPSFLTRDPYLLALVElknsgsfvtniMGGGRTKTWAPElqGM 411 Rosellinia neca...
ORY87062     295 KQVRKRRLQD-DAATELSSRSMKALQENp---aPLTKRARRLPADPGAMHLMQlsmq---gqlgQLGWQPMHLHPSirEM 367 Protomyces lact...
XP_019021208 326 APRRQLKVQI-DAKTELTQAQLKAHLRDpsstlLPPDATTLLPRDPVMLSLVLgqq------ggWSVWRQQGVHPDlaGL 398 Saitoella compl...
Feature 1        # ######    
P30776       428 LQADFKQAILRK 439 Schizosaccharomyces pombe 972h-
RPA86552     417 LSPDFVQVMAAA 428 Ascobolus immersus RN42
XP_023902729 399 LSMEVIRSAGEK 410 Quercus suber
CCX32637     440 LSPAFVKQQADL 451 Pyronema omphalodes CBS 100304
CCG82702     365 LAPEFLYRMALL 376 Taphrina deformans PYCC 5710
SMR54085     392 FSLEVIRKAGDK 403 Zymoseptoria tritici ST99CH_1E4
CCJ28293     384 LNPGYISFVQSN 395 Pneumocystis jirovecii
GAP83401     412 LTLDSIKLTNDL 423 Rosellinia necatrix
ORY87062     368 LMPGFVREIARA 379 Protomyces lactucaedebilis
XP_019021208 399 LSPDFVRGMKRR 410 Saitoella complicata NRRL Y-17804

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