3GN4


Conserved Protein Domain Family
CBD_MYO6-like

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cd21759: CBD_MYO6-like 
calmodulin binding domain found in unconventional myosin-VI and similar proteins
Myosins, which are actin-based motor molecules with ATPase activity, include unconventional myosins that serve in intracellular movements. Myosin-VI, also called unconventional myosin-6 (MYO6), is a reverse-direction motor protein that moves towards the minus-end of actin filaments. It is required for the structural integrity of the Golgi apparatus via the p53-dependent pro-survival pathway. Myosin-VI appears to be involved in a very early step of clathrin-mediated endocytosis in polarized epithelial cells. It modulates RNA polymerase II-dependent transcription. As part of the DISP (DOCK7-Induced Septin disPlacement) complex, Myosin-VI may regulate the association of septins with actin and thereby regulate the actin cytoskeleton. Myosin-VI is encoded by gene MYO6, the human homolog of the gene responsible for deafness in Snell's waltzer mice. It is mutated in autosomal dominant non-syndromic hearing loss. This family also includes Drosophila melanogaster unconventional myosin VI Jaguar (Jar; also called myosin heavy chain 95F (Mhc95F), or 95F MHC), which is a motor protein necessary for the morphogenesis of epithelial tissues during Drosophila development. Jar is required for basal protein targeting and correct spindle orientation in mitotic neuroblasts. It contributes to synaptic transmission and development at the Drosophila neuromuscular junction. Together with CLIP-190 (CAP-Gly domain-containing/cytoplasmic linker protein 190), Jar may coordinate the interaction between the actin and microtubule cytoskeleton. Jar may link endocytic vesicles to microtubules and possibly be involved in transport in the early embryo and in the dynamic process of dorsal closure; its function is believed to change during the life cycle. This model corresponds to the calmodulin (CaM) binding domain (CBD), which consists of three subdomains: a unique insert (Insert 2 or Ins2), an IQ motif, and a proximal tail domain (PTD, also known as lever arm extension or LAE).
Statistics
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PSSM-Id: 409646
Aligned: 108 rows
Threshold Bit Score: 121.845
Created: 23-Jan-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
calmodulinIQ motif
Conserved site includes 46 residues -Click on image for an interactive view with Cn3D
Feature 1:calmodulin binding site [polypeptide binding site]
Evidence:
  • Structure:3GN4; Sus scrofa Calmodulin (CaM) binding domain (CBD) of myosin VI (MYO6) interacts with two molecules of calmodulin via its proximal tail domain (PTD); contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         #  ## ################### ##  ################ #  ##  ##        
3GN4_A          1 MKSDPDHLAELVKRVNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLKKR 80   pig
VZI26454      736 LRMDPEHLSKLVERVRVWILHYRWRKAIYGALCVIKLQKKIAYREKMIIQAQKYVRGWLCRQKHKKLLDALRQLRTLAAQ 815  Sparganum pro...
CRZ24940      849 LHLSKESIENLIERMSSWLYRFRFRRTQFAVICLVKVERLLTYRAKCRIKIQSAVRTYILQKLYRPRINALSTLSALLES 928  Brugia malayi
VDK81860      345 LHQDKENIENLVKCMSSWLCRFRLRRIQFAIISLVKVERLLAHRAKCRIKIQNAVRAYLAQKSYRSRINALSALSTLSKN 424  Onchocerca oc...
XP_024506293  777 MRQDTDEMKYLVSKIQCFLNKSRWNCGIYSVIALNRLNKKIIHKRTYIIKVQAYVRGFLVRKNYKPILKLYSNTKKIENS 856  Strongyloides...
VDM38336      867 LHQDKDEMLRLVTLAQSWLRCVRWRKVQYGVLCVVKLQLKINYRAQQLLKIQSHVRGMIARRAYLPRITCLKKVRALSVN 946  dog roundworm
CDS23699      764 LRMDPANLSKMVERARKWIICYRWRRAIYTVRSVVKLREKIAYRQRNAVTIQRHTRGWLARKRVSCFIRVNRALRGMTKE 843  Echinococcus ...
VBB25635      701 LHLSKENFETLIEHMSSWLCCFRFRRIQFAVISLVKVERLLAYRAKCRIKIQNAVRTYLVRKSYRSRINALLALSTLLKN 780  Acanthocheilo...
VDK67153      732 LHLSKENIESLAKQMSSWLCRFRFRRIQLAVVSLIKIERLLAHREKCRIRIQSAVRAYLVRKLYRPRINALLALSALSEN 811  Litomosoides ...
VUZ52462      764 LRMDPDNLSNMIERARRWILTYRWRRAIYTALSVIKLQKKIVLRQNSALCIQRYLRGWLVRRRVGYIIRVKRDLEGMAKE 843  Hymenolepis d...
Feature 1                                               #                                       
3GN4_A         81 LDKFNEVVSALKd--gKQEMSKQVKDLEISIDALMAKIKSTmm--------tREQIQKEYDALVKSSAVLLSALQKKK 148  pig
VZI26454      816 LDQVKAEYEHLNg--yKGTGLANVDQASFEIAQLQRQLRNFdk-------vkYSDIVAGLDHLRANMADIQNELRKHQ 884  Sparganum proli...
CRZ24940      929 INGVYPLINKLSet-dLCKWTTFIVALKEDIKRLKHEMKHIts-------stDKEILRQCDALVNDAKEKLKCLRQQV 998  Brugia malayi
VDK81860      425 INDMYSAFNKMKet-nLHKWTANIDTLKEDVEKFKYEIKHMsc-------sdDKNILHRCNIFMNDAKEKLKYLKYQA 494  Onchocerca ochengi
XP_024506293  857 LSSLYNLIEKLEgs-kKEKWANKVEEFEKSIKEFINILITDdikvlkskvsfFDDLKKQFDTIIKEITDEITEIETRK 933  Strongyloides r...
VDM38336      947 VSELTAALNQLCed-rQAKWMLELAKMKENIDLLVDDIKRDsl-------msPKVVKTRYERLVKEAETLLLEIRKQT 1016 dog roundworm
CDS23699      844 LEEVREAYKHLPe--fQGKGYANVDQAMFELHELERRIRQGpga------mnPEELQTNFERLQTNVREVQAEVVEHQ 913  Echinococcus gr...
VBB25635      781 INGMYSLVNELDktdsYKWGSSIVDALKEDVETLKYQIKHNsy-------stDTEMFHRCDALVNNTKEKLQHLRQKV 851  Acanthocheilone...
VDK67153      812 IISMDAVVNELKea-nVHRWTAITDSLRNDVEMLKHKIKRNlc-------ptNAEMLHQCDALRNDAKEKLLHLKRQT 881  Litomosoides si...
VUZ52462      844 LRGVRESYKNLPe--fQSKGYANVDQAMFEINELEKRIRGYsts------lkPDDLRANFERVQANVRDVKLELNAHQ 913  Hymenolepis dim...

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