4QWN


Conserved Protein Domain Family
CTD_KDM2A_2B-like

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cd21743: CTD_KDM2A_2B-like 
C-terminal domain found in lysine-specific demethylase KDM2A, KDM2B, and similar proteins
This family includes lysine-specific demethylases KDM2A and KDM2B, as well as Drosophila melanogaster JmjC domain-containing histone demethylation protein 1 (Jhd1). KDM2A is a ubiquitously expressed histone H3 lysine 36 (H3K36) demethylase that has been implicated in gene silencing, cell cycle, cell growth, and cancer development. KDM2B is a ubiquitously expressed histone H3 lysine 4 (H3K4me2) or histone H3 lysine 36 (H3K36me2) demethylase that functions as a regulator of chemokine expression, cellular morphology, and the metabolome of fibroblasts. Jhd1, also called lysine (K)-specific demethylase 2 (KDM2), or [Histone-H3]-lysine-36 demethylase 1, is a histone demethylase (EC 1.14.11.27) that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in the histone code. Members in this family belong to the JmjC domain-containing histone demethylase family. They consist of two Jumonji domains (JmjN and JmjC), a CXXC zinc-finger domain, a plant homeodomain (PHD) finger, an F-box domain, followed by an antagonist of mitotic exit network protein 1 (AMN1) domain. This model corresponds to a small conserved region between the JmjC domain and the CXXC zinc-finger domain, which has been called the C-terminal domain by literature.
Statistics
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PSSM-Id: 412023
Aligned: 34 rows
Threshold Bit Score: 67.188
Created: 30-Sep-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4QWN_B          2 VHLTHFELEGLRCLVDKLESLPlhKKCVPTGIe-DEDALIADVKILLEELASSDPk-LALTGVPIVQWP 68   house mouse
XP_780290     465 IHLSWAEMEGLINLVEFLESLPrsKRSVPELId-NPDKLLEDAREMLELHQEDDPa-VGVTGVPIVKWP 531  purple sea urchin
PIK61160      539 IHLCQQEMSEMSTLIDFLESLTedRRLVPDLIt-DPDELISEGRRILTLHAADDQs-LAIEGEPVLKWP 605  Japanese sea cucumber
XP_022085616  559 VSLCRHELIGLRVLHHQLENLPsnKRSVPELIt-DPDSLLQHAKEMLAEHLDDSQp-LAVTGEAVLKCP 625  crown-of-thorns starfish
NP_001071898  367 VHLTPFEYKGLQKLIETLEFLPegKQSIPDGIl-NPLELIKTGKSLLWNHSADDHe-MSITGKSKVYWP 433  vase tunicate
XP_001633231  468 VYLTERELSGLRELIERLRTWPqaQKNIPESIe-NPEEVLKQLEELLDLHEDDDQe-LAVSGVQALFQI 534  starlet sea anemone
RMX42156      527 VYLTRFEVDGLTKLIERLRDWPqaQKNVPKTLe-DPEGVLQRLEDLLELHRDDDPe-LAASGLQHLLQI 593  Pocillopora damicornis
XP_012558683  381 VYLTNYELSGLKDLCNTFRTWNlaKFNFPTDLkeDGMYLIDRLEELLQHHEDDDQf-LACQGVNIFKQL 448  Hydra vulgaris
KXJ12962      446 VHVTEKEIKGLVSLIEKFREWPhaKKCVPQTIe-NPDKLLEDLEQLLSQREDDEHslSTASGIQHLFQI 513  Exaiptasia pallida
RDD43023      616 LRLPAVVYDGLTCLANNLEKNVqfHQATPEVVe-NPFQLIQDLNSTLQEHCDDDQs-LAITGISILNPN 682  Trichoplax sp. H2
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