Conserved Protein Domain Family
JMTM_dNotch

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cd21706: JMTM_dNotch 
juxtamembrane and transmembrane (JMTM) domain found in Drosophila melanogaster neurogenic locus Notch protein (dNotch) and similar proteins
Drosophila melanogaster neurogenic locus Notch protein (dNotch) is an essential signaling protein which has a major role in many developmental processes. It functions as a receptor for membrane-bound ligands Delta and Serrate to regulate cell-fate determination. It regulates oogenesis, the differentiation of the ectoderm and the development of the central and peripheral nervous system, eye, wing disk, muscles and segmental appendages such as antennae and legs, through lateral inhibition or induction. It also regulates neuroblast self-renewal, identity and proliferation through the regulation of bHLH-O proteins; in larval brains, it is involved in the maintenance of type II neuroblast self-renewal and identity by suppressing erm expression together with pnt. It might also regulate dpn expression through the activation of the transcriptional regulator Su(H). This model corresponds to the juxtamembrane and transmembrane (JMTM) domain of dNotch, which comprises an extended coil, a transmembrane helix (TM), and a beta-strand.
Statistics
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PSSM-Id: 411989
Aligned: 45 rows
Threshold Bit Score: 72.2929
Created: 16-Mar-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative
Feature 1:putative polypeptide substrate binding site [polypeptide binding site]
Evidence:
  • Comment:Following an initial cleavage by alpha-secretase, the resulting transmembrane domain of Notch is cleaved by gamma-secretase to release the intracellular transcription factor.
  • Comment:Based on the structure evidence that Homo sapiens Notch1 interacts with nicastrin and presenilin-1.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ###  ###                      ## # #########    ##  ###                        
P07207       1719 DFQIHSVRGIKNpgde---dngEPPANVKYVITGIILVIIALAFFg--mVLSTQRKRA-HGVTWFPEGFRAPAavm---- 1788 fruit fly
OWF50910     1784 WTPLVPIRQVQVldqirpttqtPVESSIIAPVVAAVCALLILTFIi---VVVLSRKRA-SGNTWFPEGFFTTAsstqkdt 1859 Yesso scallop
XP_009044486 1391 GMPVGKIESLGKept-----vdSPAITFVYIVVACGAILLITLVV----IIVISRKRE-RAVTWFPEGFFNKRgseka-- 1458 owl limpet
PVD22447     1669 SAPVYKVGTDTVpit----dppSSNVPVVWVVAACGILVVITIVV----IVVVSRKRV-RGFTWFPEGFFHHQessk--- 1736 Pomacea canal...
TRY63784     1694 DWGIVEIGAGDEgrg-----gnQGNSEVTGVVIGVTILALIVVVLg---VITQTNKRKaKGITWFPEGFMNAAgata--- 1762 Tigriopus cal...
ELT93394     1712 NVPILKVGETPKti-------nEPTGELLLIVVSVSACIIIVALLlg-vLYTMTRKRA-HGTTWFPEGFTAARrpqdgq- 1781 Capitella teleta
XP_013093464 1456 GVAVQQIGTEREidp----kvqASNLNVLYIIIGVAAAVVISVFGi---IVMLKRKRV-YANTWYPDNTKPKSakdia-- 1525 Biomphalaria ...
AWT22989     1651 DFDIHKIDTEEStq------epNAPFKLVYIVVSCVCVLAIIILL----VVVMSRKRT-RGVTWFPEGFFESIrsgkdt- 1718 common octopus
XP_012943392 1388 VVAVHQIGTQDPsgpd--lpglESSNTQTFVLLMCVCAGILVLTIi--vIMMVSRKRV-RGITWFPEGFFSKSsdask-- 1460 California se...
RUS91728     1344 PVAVHQISSSLDd--------aSSSTMDLLVPIIVVCVGIIAITViiitVLNRSRKRA-HGITWFPDGFFSNAaegat-- 1412 eastern emera...
Feature 1                             
P07207       1789 --srrRRDPHGQEMRNLNKQ 1806 fruit fly
OWF50910     1860 tnsskRRVPDGEEGKNMKGL 1879 Yesso scallop
XP_009044486 1459 -gvrnRRGPDGEEMKDVQKG 1477 owl limpet
PVD22447     1737 --pvsRRGPDGEEMNHIQKG 1754 Pomacea canaliculata
TRY63784     1763 -lrpgKRGADGQEMFGVGSK 1781 Tigriopus californicus
ELT93394     1782 emkdvQQGVPSQGEEPVEEG 1801 Capitella teleta
XP_013093464 1526 kpgqnRKGPDGEEMHDKINQ 1545 Biomphalaria glabrata
AWT22989     1719 skhipRRKPDGEEMKNLPRT 1738 common octopus
XP_012943392 1461 -parnRNGPEGEEMQDKLDK 1479 California sea hare
RUS91728     1413 -parsRKGPDGEEMQVKLDK 1431 eastern emerald elysia

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