2LLM,2LOH,6IYC


Conserved Protein Domain Family
JMTM_APP_like

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cd21699: JMTM_APP_like 
juxtamembrane and transmembrane (JMTM) domain found in the amyloid-beta precursor protein (APP) family
The amyloid-beta precursor protein (APP) family includes amyloid-like proteins APLP-1 and APLP-2. APP (also called ABPP, APPI, Alzheimer disease (AD) amyloid protein, amyloid precursor protein, amyloid-beta A4 protein, cerebral vascular amyloid peptide (CVAP), PreA4, or protease nexin-II (PN-II)) functions as a cell surface receptor and performs physiological functions on the surface of neurons relevant to neurite growth, neuronal adhesion and axonogenesis. Amyloid-beta peptides are lipophilic metal chelators with metal-reducing activity; they bind transient metals such as copper, zinc and iron. APLP-1, also called APLP, may play a role in postsynaptic function. It couples to JIP signal transduction through C-terminal binding. APLP-1 may interact with cellular G-protein signaling pathways. It can regulate neurite outgrowth through binding to components of the extracellular matrix such as heparin and collagen I. APLP-2 (also called amyloid protein homolog (APPH), or CDEI box-binding protein (CDEBP)) may play a role in the regulation of hemostasis. Its soluble form may have inhibitory properties towards coagulation factors. APLP-2 may bind to the DNA 5'-GTCACATG-3'(CDEI box). It inhibits trypsin, chymotrypsin, plasmin, factor XIA, and plasma and glandular kallikrein. This model corresponds to juxtamembrane and transmembrane (JMTM) domain of APP, which consists of the intact transmembrane (TM) domain with adjacent N-terminal juxtamembrane (JM) region. More than half of all familial APP mutations of Alzheimer's disease are seen in its JMTM domain region.
Statistics
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PSSM-Id: 411982
Aligned: 11 rows
Threshold Bit Score: 33.0245
Created: 6-May-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
homodimerpolypeptide
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #                  #  ##  ## ##  ##    #  #   
2LLM_A         4 KLVFFAEDvg----sNKGAIIGLMVGGVVIATVIVI--TLVMLKKK 43   human
2LOH_A         4 KLVFFAEDvg----sNKGAIIGLMVGGVVIATVIVI--TLVMLKKK 43   human
6IYC_E         1 MLVFFAEDcg----sNKGAIIGLMVGGVVIATVIVI--TLVMLKKK 40   human
P51693       566 QRDELAPAgt---gvSREAVSGLLIMGAGGGSLIVL--SMLLLRRK 606  human
Q06481       680 SVGPLREDfs----lSSSALIGLLVIAVAIATVIVI--SLVMLRKR 719  human
XP_001637354 495 ERDFFGEPrs---paTFAAVIGLSCGALVIMIVIIV--AMAMRRSR 535  starlet sea anemone
XP_009019810 504 DTIGVEQGsgynpnfGAAIPLGVAVGTLTVAIVIVV--GVLIMRRR 547  Helobdella robusta
XP_029647547 563 EQVSLDHLyn---nsPANSVVGIAIGGVAVFIIILV--AVVMLRRR 603  common octopus
PVD27120     431 LQQDLRVAsaatsssQFGTTFGIAIGSVAVFIMLVV--AVVMLRRR 474  Pomacea canaliculata
XP_009020543 815 SKPQLAKNkne-kefSSAIPLGLSVGAVTVAIVIIA--GVMIMRRR 857  Helobdella robusta
THU51636     525 GNNELLNPsss--klSTGAVVGIVLGAVAVAAILSIvvTILIMRRR 568  Balbis banana

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