2Q9Q,2E9X


Conserved Protein Domain Family
GINS_B_Sld5

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cd21692: GINS_B_Sld5 
beta-strand (B) domain of GINS complex protein Sld5
Sld5 is a component of the GINS (named from the Japanese go-ichi-ni-san, meaning 5-1-2-3 for the Sld5, Psf1, Psf2, and Psf3 subunits) tetrameric protein complex, within which Sld5 interacts with Psf1 via its N-terminal A-domain, and with Psf2 through a combination of the A and B domains. In Drosophila, Sld5 is required for normal cell cycle progression and the maintenance of genomic integrity. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits Sld5, Psf1, Psf2 and Psf3 are homologous, and homologs are also found in archaea; the complex is not found in bacteria. Each subunit of the complex consists of two domains called the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3. This model represents the B-domain of GINS subunit Sld5.
Statistics
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PSSM-Id: 412028
Aligned: 76 rows
Threshold Bit Score: 44.46
Created: 21-Apr-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
tetramer
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Structure:2Q9Q, human GINS subunit Sld5 interface with other subunits in the heterotetramer; contacts at 4A
    View structure with Cn3D
  • Comment:the GINS complex contains four subunits: Sld5, Psf1, Psf2, and Psf3; it functions as a tight heterotetrameric complex in which major interactions are mediated through helix-helix interactions that amplify the helix-bundle-like structure of each individual subunit

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         # ### #                      #    #  ######                
2Q9Q_B       165 PDLDSYVFLRVRERQENILvepdt-deqrDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223 human
XP_648113    150 PDMSTFVFVRILTNVDNFKihp-----ddEYGFEMQKGEVYLFPYYSVHDFINTNTFELI 204 Entamoeba histolytica HM-1:IMSS
XP_002836200 164 PDLDGAVFCKVVRDIEDNIari----pgtDSEFKLTKGDVYVVRYSAVREFVLRGEIELI 219 Tuber melanosporum Mel28
Q7SF49       167 PDLDSAVFIRLLRDAEIEChgv-----dvDGVLTGKEGDIVILRWSDAKGLVEKGDAELV 221 Neurospora crassa
XP_001394192 207 PDGKEVVFVRCLVEESRVVvppgdgveveVEGTVLRMGEVWAVRWEGVKGAWGRGEVEVL 266 Aspergillus niger CBS 513.88
EGX51732     165 PDLEGAVFLRVVRDVNVAIaw------enGETLDMRAGDVYVIRYSAVQEAVKRGDVELI 218 Arthrobotrys oligospora ATCC 24927
RPD72969     200 PDKLRPVFAHALVDCPPMRlp-------dGSATEMQKGQISLTPYHVVEHLLLRGEVELV 252 Lentinus tigrinus ALCF2SS1-7
Q4IQM6       167 PDLDTAVFIRMLRDKDVYGkgt-----daDITLPATNGDVLIIRWSSAKHMVDVGDAELV 221 Fusarium graminearum PH-1
Q2HE71       167 PDLESAVFIRALKDTPVEArgv-----dtDAYADLKESDIVILRWADAKKLVEAGTAELV 221 Chaetomium globosum CBS 148.51
EGO23044     195 PDKSRPVFVHAIQNCPPVRlp-------dGTALEMTKGHISLTPFSIVEQLIARGEAELV 247 Serpula lacrymans var. lacrymans S7.9

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