4P42


Conserved Protein Domain Family
SMP_ESyt2

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cd21680: SMP_ESyt2 
Click on image for an interactive view with Cn3D
synaptotagmin-like mitochondrial-lipid-binding protein (SMP) domain found in extended synaptotagmin-2 (E-Syt2) and similar proteins
Extended synaptotagmin-2 (E-Syt2), also called Chr2Syt, tethers the endoplasmic reticulum to the cell membrane and promotes the formation of appositions between the endoplasmic reticulum and the cell membrane. It binds glycerophospholipids in a barrel-like domain and may play a role in cellular lipid transport. E-Syt2 plays a role in fibroblast growth factor (FGF) signaling via its role in the rapid internalization of FGFreceptor 1 (FGFR1) that has been activated by FGF1 binding; this occurs most likely via the AP-2 complex. E-Syt2 consists of an N-terminal endoplasmic reticulum (ER)-membrane anchor, a central SMP-domain, and three C-terminal cytoplasmic C2-domains. The ER-membrane anchor and C2 domains are required for tethering, and the SMP domain may be implicated in lipid transport. This model corresponds to SMP domain.
Statistics
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PSSM-Id: 439236
Aligned: 7 rows
Threshold Bit Score: 377.69
Created: 24-Apr-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
lipid bindinghomodimer
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:lipid binding site [chemical binding site]
Evidence:
  • Structure:4P42; Homo sapiens Synaptotagmin-2 binds lipids, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                             #    #   #   #      #         #    #                       
4P42_A         3 DTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGaNTHLSTFSFTKVDVGqqPLRINGVKVYTENVDKRQIILDLQI 82   human
A0FGR8       191 DTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGaNTHLSTFSFTKVDVGqqPLRINGVKVYTENVDKRQIILDLQI 270  human
XP_006011665 127 DIERAEWLNKTVKHLWPFICQFIQKLFRETIEPAVRGaNPHLSTFSFTKVDMGdqPLRINGVKVYTENVEKKQVILDLQI 206  coelacanth
XP_007899368 143 DVERVEWINKTVKHMWPYICQFVEKLLKETIEPAVRGaNSHLSTFSFTKINLGdkPLRINGVKTYTENVDNRQIILDLQI 222  elephant shark
Q7ZWU7       123 DIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAVRGaNAHLSTFSFTKIDMGsqPLRINGVKVYTENVDKRQIILDLQI 202  African clawed...
XP_015137636 123 DTERAEWLNKTVKQMWPFICQFIEKLFRETIEPAVRGaNNHLSTFSFTKIDIGhqPLRINGVKVYTENVDKRQIILDLQI 202  chicken
XP_021333611 139 DVERVEWLNKTVNQMWPYVCQFVDKLFKETIEPAIKEsNAHLSTFSFTKIDLGdkPLRINGVKVYSENVDKRQIIMDLQI 218  zebrafish
Feature 1         #     # #             #     #                  # #         #                   
4P42_A        83 SFVGNCEIDLEIKRYFCRAGVKSIQIHGTMRVILEPLIGdMPLVGALSIFFLRKPLLEINWTGLTNLLDVPGLNGLSDTI 162  human
A0FGR8       271 SFVGNCEIDLEIKRYFCRAGVKSIQIHGTMRVILEPLIGdMPLVGALSIFFLRKPLLEINWTGLTNLLDVPGLNGLSDTI 350  human
XP_006011665 207 SFVGNCEIDLEIKRYFCRAGVKSIQIHGTMRVILEPLIGdVPLVGAVTIFFLRKPLLEINWTGLTNLLDIPGLSGLTDTI 286  coelacanth
XP_007899368 223 SYVGNSEIDLEIKRYFCRAGVKSIQLNGIIRVILEPLLGdMPLIGALSFFFLRRPLLEINWTGLTNLLDIPGLNGMSNTI 302  elephant shark
Q7ZWU7       203 SFVGETEIDLEVKRYFCRAGVKSIQLHGTMRVILEPLIGdVPIVGALSIFFLRKPLLEINWTGLTNMLDMPGLNGLSDTI 282  African clawed...
XP_015137636 203 SFAGNCEIDLEIKRYFCRAGVKSIQIHGTMRVILEPLIGdMPLIGALSLFFLRKPLLEINWTGLTNLLDVPGLNGLSDTI 282  chicken
XP_021333611 219 SYVGNTEIDVDVKRYYCRAGIKSIQLHGVLRVILEPLLGnMPLVGAFSLFFLKKPLLDINWTGLTNILDIPGLNGFSDQM 298  zebrafish
Feature 1           ##  ##  ####    
4P42_A       163 ILDIISNYLVLPNRITVPL 181  human
A0FGR8       351 ILDIISNYLVLPNRITVPL 369  human
XP_006011665 287 ILDIISNYLVLPNRITVPL 305  coelacanth
XP_007899368 303 ILDIISNYLVLPNRITVPL 321  elephant shark
Q7ZWU7       283 ILDIISNYLVLPNRITVPL 301  African clawed frog
XP_015137636 283 ILDIISNYLVLPNRITVPL 301  chicken
XP_021333611 299 IQDIISAYMVLPNRITVPL 317  zebrafish

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