Conserved Protein Domain Family
SMP_ESyt1

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cd21679: SMP_ESyt1 
synaptotagmin-like mitochondrial-lipid-binding protein (SMP) domain found in extended synaptotagmin-1 (E-Syt1) and similar proteins
Extended synaptotagmin-1 (E-Syt1), also called membrane-bound C2 domain-containing protein (MBC2), binds glycerophospholipids in a barrel-like domain and may play a role in cellular lipid transport. It also binds calcium via the C2 domains and translocates to sites of contact between the endoplasmic reticulum and the cell membrane in response to increased cytosolic calcium levels. E-Syt1 tethers the endoplasmic reticulum to the cell membrane and promotes the formation of appositions between the endoplasmic reticulum and the cell membrane. E-Syt1 consists of an N-terminal endoplasmic reticulum (ER)-membrane anchor, a central SMP-domain, and five C-terminal cytoplasmic C2-domains. The ER-membrane anchor and C2 domains are required for tethering, and the SMP domain may be implicated in lipid transport. This model corresponds to the SMP domain.
Statistics
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PSSM-Id: 439235
Aligned: 6 rows
Threshold Bit Score: 365.271
Created: 24-Apr-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative lipidputative
Feature 1:putative lipid binding site [chemical binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens Synaptotagmin-2 (4P42) binds lipids.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            #    #   #   #      #         #    #                       # 
Q9BSJ8        137 EKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRgSNPHLQTFTFTRVELGEKpLRIIGVKVHPgqRKEQILLDLNISYv 216  human
XP_021329370  121 EKVEWINKILQQAWPFVGQYLEKLLVETIAPSIRaTSAHLQTLSFTKVDLGDRaMKVVGVKAYTefDRRQVILDLYISYa 200  zebrafish
XP_025001291   96 ERAEWLNKILAQTWPFFGRYMEKLLVESIAPSIRaSNTHLQTFTFTKVDMGEKpLRVLGVRAHPgtHKQQILLDLNISYv 175  chicken
XP_014341295  114 EKVEWLNKIITQMWPFIGKYLEKLLMETIAPTIRaSNNHLQTFFFTKVQLGEKpLKVVGVKAHTemDKRQIILDLHLSFv 193  coelacanth
OCT95677      102 EKAEFLNKMVAQMWPFIGQYLEKLLTDSIAPTIRaSNPHLSTFYFTKINLGEKaPKVTGVKVHTefDKKQIILDLHLSYv 181  African clawe...
XP_007908775   97 ERAEWLNKVLLQAWPFVGQFLEKLLLNSIAPAVReSNNHLQTFSFTKVSFGVKpLKIHGVKTHTdsNKNQVTIDLHISYi 176  elephant shark
Feature 1             # #             #     #                  # #         #                      
Q9BSJ8        217 GDVQIDVEVKKyFCKAGVKGMQLHGVLRVILEPLIGDLPFVGAVSMFFIRRPTLDINWTGMTNLLDIPGLSSLSDTMIMD 296  human
XP_021329370  201 GDVEINVEVKKyFCKAGVKGIQLHGKLRVILEPLIGDVPLVGAITMFFIRRPKLDINWTGMTNLLDIPGLNAMSDTMIMD 280  zebrafish
XP_025001291  176 GDVQIDVEVKKfFCKAGVKGMQLHGTLRVILEPLLGDVPIVGALTMFFIRRPTLDINWTGMTNLLDIPGLSSMSDTMIMD 255  chicken
XP_014341295  194 GDTEINVEIKRyFCKAGVKGIQLHGMLRVILEPLIGDMPLVGAVTIFFIRRPVLDINWTGVTNLLDIPGLNAFTDTKIMD 273  coelacanth
OCT95677      182 GDIEVNVEVKKyFCKAGIKGMQLHGMLRVILEPLIGDVPIIGAITLFFIRRPVLDINWTGLTNLLDIPGLNVMSDTMVMD 261  African clawe...
XP_007908775  177 GDCEINVEVKKyFCKAGVNGIQLHGMLRVILEPLIGDMPLVGAVTLFFIQRPVLEINWTGLTNLLDIPGLSSKTDTMLMD 256  elephant shark
Feature 1         ##  ##  ####    
Q9BSJ8        297 SIAAFLVLPNRLLVPL 312  human
XP_021329370  281 AIASFLVLPNRLTVPL 296  zebrafish
XP_025001291  256 TISSYLVLPNRLLVPL 271  chicken
XP_014341295  274 TIAAFLVLPNRLTIPL 289  coelacanth
OCT95677      262 IISGFLVLPNRLAIPL 277  African clawed frog
XP_007908775  257 TIASFLVLPNRITCPL 272  elephant shark

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