Conserved Protein Domain Family
SMP_SYT

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cd21677: SMP_SYT 
synaptotagmin-like mitochondrial-lipid-binding protein (SMP) domain found in the synaptotagmin family, mostly plants
The synaptotagmin family includes Arabidopsis thaliana synaptotagmins (AtSYT1-5) and similar proteins. AtSYT1, also called NTMC2T1.1, or synaptotagmin A (SYTA), plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. It may function in membrane resealing during calcium-dependent freezing tolerance. It regulates endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata. AtSYT2, also called NTMC2T1.2, or synaptotagmin B (SYTB), may play an important role in regulating an unconventional protein trafficking from the cytosol to the extracellular matrix. AtSYT3 (also called NTMC2T1.3, or synaptotagmin C, or SYTC), AtSYT4 (also called NTMC2T2.2, or synaptotagmin D, or SYTD) and AtSYT5 (also called NTMC2T2.1, or synaptotagmin E, or SYTE) may also be involved in membrane trafficking. This model corresponds to the SMP domain of SYT family proteins, which may be implicated in lipid transport.
Statistics
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PSSM-Id: 439233
Aligned: 104 rows
Threshold Bit Score: 152.316
Created: 23-Apr-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative lipid
Feature 1:putative lipid binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                  #  ##   #   #                       #    #             
Q9SKR2         60 PLWVkNPDFDRVDWINRFLeyMWPYLDKAICKTAKNIAKPiiee-qipKYKIDSVEFETLTLGslpPTFQGMKVYLtd-- 136  thale cress
XP_003063440   29 PSWIsYPDVDRAPWLNRAArqMWPFLNKAISNSVVWSVERplnrlvdrSGPISSCKFSKFTLGlepLIFVSVKAVDev-- 106  Micromonas pu...
XP_001419795   77 PKWIkYADVDRVPWLNKAArqMWPSLDKAIAVSVVEALEPtln--dlaKSTGMSMNFKKFTCGvepPILASVKVSTes-- 152  Ostreococcus ...
XP_007510685   87 PKWVdFSDYHRVPWLNKAVktMWPFLDKAIASSVIWALSDvvn--dlaKMSKLKIGFRTWTLGdepPILTAAKVLDdv-- 162  Bathycoccus p...
XP_003055153   12 PQWCkRPNFETTVWLNSAIktLWPRLSAALSKTIGNVLSRrls---rvSPLGMSLRIKEFQLGsesLNLLSVNNVAnrnk 88   Micromonas pu...
XP_002503793   88 PQWCkKPDHETTAWLNGLLaeLWPQLSAALSEKIGTAVGKkla---riSPLGLNLSFKEFGLGneaISLLSVRKVGrak- 163  Micromonas co...
QDZ25647       86 PAWVkFPDYDRCMWLNNMAqnWWPCLSTAICRTVKQRLQQllq--kkkPDLFSSIVFETFSMGsvpPRFSGAKVYNtn-- 161  Chloropicon p...
XP_022840697  139 FPKQlGRDVQSFRWLNEVVkvAWPYLDAATSAVIVSALDPilq--ntrPSFLTSIEFERFSFGsvpAIIEAVKVYEag-- 214  Ostreococcus ...
PSC68527       85 PMWIkHADWERGEHLQSFVtlAWPTFNRMICNIIKREVEErl----gsHGEFGRVSFARLSFGrtpPVVTAVKGVPlrd- 159  Micractinium ...
XP_005647589  101 GAKLpQPPNGCSGYLSKLMdkVWPYVDNAVSAVARAKLEPklk--errAAWMADITLEHFTLGtkaPMVTGVKLYHsstg 178  Coccomyxa sub...
Feature 1                       #      # # #                                                      
Q9SKR2        137 -----eKELIMEPCLKWa-aNPNILVAIKaf------------------------------------------glKATVQ 168  thale cress
XP_003063440  107 -----pNEIGLDIEFKWaalEPEVQLDVGlfd-----------------------------------------alKLPFA 140  Micromonas pu...
XP_001419795  153 -----eGEVILDIEFKWaakDASIVLDVStl------------------------------------------giKLPIE 185  Ostreococcus ...
XP_007510685  163 -----eGEVTLDLEFKWvavKPEVVLDVKaa------------------------------------------giNLPIK 195  Bathycoccus p...
XP_003055153   89 santdgSSVVLDLDVRWt-gNPTVVLAVGyr------------------------------------------glPLTVR 125  Micromonas pu...
XP_002503793  164 ----dtNEVILDFDMRWc-gDPTIVLNASvl------------------------------------------glPLMVR 196  Micromonas co...
QDZ25647      162 -----eEEIILDLEMTWtatNADIVMSVRlaq----------------------------------------gtvALPVQ 196  Chloropicon p...
XP_022840697  215 ----neGALEIDLHVFWa-gDPDVVLKIRaaq----------------------------------------aalAVPVS 249  Ostreococcus ...
PSC68527      160 ---gdaLAMVIDIDVRWa-gEPDVVMQLSgi-------------------------------------------pGAAVA 192  Micractinium ...
XP_005647589  179 ---gisETASMDIDFLWg-gNQARPLILNtfewssewntcirdvslvikplpfflnvalglaqfiniqaitlyilFQSVG 254  Coccomyxa sub...
Feature 1            # #   # #              # # #         #                        #  ##  # ####  
Q9SKR2        169 VVDLQVFAQPRITLKPLvpsfPCFANIYVSLMEkPHVDFGLKLGGadlmsiPGLYRFVQEQIKDQVANMYlWPKTLVVPI 248  thale cress
XP_003063440  141 IEKIEAFGTIRLVFGPLcewwPTFSDMQIAFIGkPTINFNLRLVGgditkvPKVEKSLSKLIKNAIYNLMvWPNRLDIPI 220  Micromonas pu...
XP_001419795  186 MNNVEAYGTFRLVFGPLvpwwPSFSALKLAFVDkPAIDFSLKLVGgditavPLVASMLRDLIKNQLVDLMvWPARLWCAV 265  Ostreococcus ...
XP_007510685  196 LEHIEAFGVVRLVFTPLvpwwPSFDGMKIAFVDkPTIDFSLKLIGgdintiPFVASSLRHLITNSLVDLMvWPQKIWVPM 275  Bathycoccus p...
XP_003055153  126 LSELQVAGTLRLQLSDFddrmPTFHLLGISFVEkPDIRFALSLVGgnidmiPGFSDAITNVIGNALTRVMvWPQSIRVPI 205  Micromonas pu...
XP_002503793  197 LDELQLIGPLRLCFADFdnnlPCFHMLKIAFVErPDINFKLKLVGgdidmvMGLKEKITEVIGNGLGKALvWPKYIRVPI 276  Micromonas co...
QDZ25647      197 LGQVLFQGTVRLIFKPLvpqwPCFGAISVAFVGkPQVDFSLRLIGgelmsvPGLAPALHDLLKNRLLSAMvWPRRVYAPV 276  Chloropicon p...
XP_022840697  250 LTEFECTFTLRMIFAPLigtfPCFGALTLSLTEdPVVKFDLRVVGgditllPGLAQPLRTYIQALIASFLvWPRCITVPI 329  Ostreococcus ...
PSC68527      193 VRTCQVAGMLRLVLSPIeeelPFLTGLTLSLLDkPYLDFDIRVLGgdvmslPALGSWLRSSVAGIIQERLvWPENLGWRW 272  Micractinium ...
XP_005647589  255 VERVIVSGRVRVLLRPLmdtlPIIGAVQVAFADmPSFRFDLRLLGgdvtslPFLEDWLQNVLCSFLEHYT-LPNKVSAEI 333  Coccomyxa sub...

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