5H5A,5GYD,5VKZ,5H55,5H54,5YK7,5GYK


Conserved Protein Domain Family
SMP_Mdm12

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cd21672: SMP_Mdm12 
Click on image for an interactive view with Cn3D
synaptotagmin-like mitochondrial-lipid-binding protein (SMP) domain found in mitochondrial distribution and morphology protein 12 (Mdm12) and similar proteins
Mitochondrial distribution and morphology protein 12 (Mdm12), also called mitochondrial inheritance component Mdm12, acts as a component of the endoplasmic reticulum-mitochondria encounter structure (ERMES)/Mdm complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria. Components of this complex are involved in the control of mitochondrial shape and protein biogenesis, and function in nonvesicular lipid trafficking between the endoplasmic reticulum (ER) and mitochondria. Mdm12 is required for the interaction of the ER-resident membrane protein Mmm1 and the outer mitochondrial membrane-resident beta-barrel protein Mdm10. The Mdm12-Mmm1 subcomplex functions in the major beta-barrel assembly pathway that is responsible for biogenesis of all mitochondrial outer membrane beta-barrel proteins, and acts in a late step after the SAM complex. The Mdm10-Mdm12-Mmm1 subcomplex further acts in the TOM40-specific pathway after the action of the Mdm12-Mmm1 complex. This model corresponds to the SMP domain of Mdm12, which adopts a head-to-head and tail-to-tail dimer configuration rather than existing solely as a monomer. It may be implicated in lipid transport.
Statistics
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PSSM-Id: 439228
Aligned: 196 rows
Threshold Bit Score: 174.944
Created: 13-Apr-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:5YK7; Saccharomyces cerevisiae Mdm12 in complex with Mmm1, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ##### # #      #                                       #  # #                   
5H5A_A         2 MSVEIDWDNIrgdlsVNQGVKDFLNSRLQEfeLPSYVNNLKVTNFDLGTMPPNVILKQMDDPLDEFYsyllqegdis--- 78  Kluyveromyces l...
5YK7_B         1 MSFDINWSTLesdnrLNDLIRKHLNSYLQNtqLPSYVSNLRVLDFDLGKVGPAITLKEITDPLDEFYdsireeg------ 74  Saccharomyces c...
CCG84191       1 MSLEVNWKALdp--aLGSSLRTLLNARLTNahLPGFLRNVDILSFNLGSVPPEIVIKDITDPFPEFYeddseaemqdtsg 78  Taphrina deform...
PSK77182       1 MSFDINWDKLvadnsLNESIREFLDIQLNQlsLPPYIDNLTVTKFSLGTKAPEITIRHVGDPFDEFYeegsdgeeenais 80  [Candida] auris
SGZ55475       1 MSFDIDWEKViedesINQGLEEILNEQLKKvtLPSFIDKLTVTSFSLGKIPPEITIRHIDNPFEEFYhdynsdenitkvv 80  [Candida] inter...
RKP31723       1 MSFQINWLLLandaeLNENVRLFIDKELNSllLPSFIDKLAVTRFSLGETAPEITIRYIGDPFDDFYadhdtddearrym 80  Metschnikowia b...
QFZ30550       1 MSFDINWDKLvsddsISNSIKDFLNDQFNEisLPSFVDTLSVTGFSLGSIPPNITIRHIGNPFDEFYkrnvpeeeakkgq 80  Clavispora lusi...
CDR41237       1 MSIDINWQDFgndtsLSESIRSFLDEQFSSlpLPDFLRDLHVANVCLGTIAPEVTIRHIGAPFPEFYihqqmdkrsdeet 80  Cyberlindnera f...
XP_020050219   1 MSFDINWDQLatdaeLNLQFQQFLDRQFKSisFPPYITDVCVTNFQLGSIPPEITIRHIGDPFPEFYtddddndndnddd 80  Ascoidea rubesc...
XP_012748204   1 MSLKIYWERIne--kQSIKAKDYLNRIFASinKPDIIGRFEITSLSLGSKPPSFEIISIADPDPNIVtpir--------- 69  Acytostelium su...
Feature 1                                                                                        
5H5A_A           --------------------------------------------------------------------------------     Kluyveromyces l...
5YK7_B           --------------------------------------------------------------------------------     Saccharomyces c...
CCG84191      79 veeergsaerdagrqpsetglgispaqrrrssgheptlsssnihndeddhetasvlsgpppyaehlshrpmnsmsgwegm 158 Taphrina deform...
PSK77182      81 paisdsdtdsvgndtddaydghttlnetglkesladlppsppplmr---------------------------------- 126 [Candida] auris
SGZ55475      81 kslspqlsesdsdnsddehlhyttlnefdnkeilpnfsptpiet------------------------------------ 124 [Candida] inter...
RKP31723      81 spqspssltsdssddsdsdedativqppttvdqaldaaqsdld------------------------------------- 123 Metschnikowia b...
QFZ30550      81 lpvspelsgsdsdsseeepainnldsanqqdftpllpevdsl-------------------------------------- 122 Clavispora lusi...
CDR41237      81 pdgvkgrnksveinkgiildh----------------------------------------------------------- 101 Cyberlindnera f...
XP_020050219  81 dddgsdtstnptpsisne-------------------------------------------------------------- 98  Ascoidea rubesc...
XP_012748204     --------------------------------------------------------------------------------     Acytostelium su...
Feature 1                                                                                        
5H5A_A        79 -----------------------------------------------------------------------keaakdknt 87  Kluyveromyces l...
5YK7_B        75 -------------------------------------------------------------------------gsggspn 81  Saccharomyces c...
CCG84191     159 nvpyfqsafatpnqgivsasglstprprflgwanafqpadttsisssndhgcdrrmpsqtdrrtsmagtrasintpgdps 238 Taphrina deform...
PSK77182     127 ---------------------dphdilrnfhaysmnnvglghhhmnavnesetptnifaqnttkrpaitpgqktakrdcn 185 [Candida] auris
SGZ55475     125 ------------------------asrksldifknfhnynmnnvglghhdmdtpanffspnnypfranstrqpeanksen 180 [Candida] inter...
RKP31723     124 ------------------------rdprkgtdflrpfsnynmnnlglgppeldppasifphsayrlqgsgrakdserspy 179 Metschnikowia b...
QFZ30550     123 -------------------------rrqnqeskhfnnfnmnnvglghmdldtptnffnphayrlhsnsvgrnesvkkndn 177 Clavispora lusi...
CDR41237     102 -----------------------------------------------ssnlgtsseigdngtsdaaiedqgnedtedrsr 134 Cyberlindnera f...
XP_020050219  99 -------------------------------------------------igndssnngnninsdnatsiksklksendpn 129 Ascoidea rubesc...
XP_012748204  70 -----------------------------------------------------------------------------psn 72  Acytostelium su...
Feature 1        ## #                                                #                           
5H5A_A        88 DVQLLVELDYkGDMSIELSADLVLNYPspqFMILPVKLRISDIGMHCLCLLAYLkkqLFISFLcdvsdpllendklqvd- 166 Kluyveromyces l...
5YK7_B        82 DIQFLLEVEYkGDLLVTIGADLVLNYPvekFMTLPVKLSISDIGLHSLCIVACLskqLFLSFLcd--------------- 146 Saccharomyces c...
CCG84191     239 DVQLEVQLRYtGDIVVKLKVDLALNYPspfFVTLPVEMTISDLLVDTTAVAAYIddkVHVSLLeg--------------- 303 Taphrina deform...
PSK77182     186 DLQTIVEFDYhGDSSMEVTVNLLVNYPsaqFITLPIKLHITDLVIHSLAVVAYLkkcIYVAFLcdlndaqqgyfgksngl 265 [Candida] auris
SGZ55475     181 DIQFILDIDYkGDASLEITVNLQVNYPsshFISLPIKLRISDIVIHSLAAVAYLeksVFITFLcdlndtssdyftssnss 260 [Candida] inter...
RKP31723     180 DIQFILEVEFqSKIAIDLSINLLVNYPlthFISLPITLHVTDLAIHSLAAVAYLekkVFISILcdlndsaadyfttakgp 259 Metschnikowia b...
QFZ30550     178 DIQFILEIDYkGDVALEIVVNLLVNYPsahFITLPIKLKITDLVIHSLAAVAYLensVFISFLcdlndadsdyftsasmh 257 Clavispora lusi...
CDR41237     135 DIQFLVELEYkGDVSIELHVDLLLNYPspgFIKLPVKLRIVDLGIHSLAVISHVnkvVYISFLcdvtdeqfdsllanp-- 212 Cyberlindnera f...
XP_020050219 130 DIQFIIEIDYkGNLSIEISASLLLNYPfpgFIQLPVKLKLTNLVIHSLAILSYCkrlINFSFLcdindpitnstpp---- 205 Ascoidea rubesc...
XP_012748204  73 SIEARVRFSYdGDAHFMLEAELLVNAPtpkFIIFPISIKVSSPHISGIASVIYDeenVCFCLLpsgni------------ 140 Acytostelium su...
Feature 1                                                                                        
5H5A_A       167 -----------------psgpnfmgkraleriSLIRNIKIHTELGqldq------------gegsVLRSVGKLEEFLVDL 217 Kluyveromyces l...
5YK7_B       147 ------------------------------ggSIVRSMKIETEIGeqyq------------gqgsVLRSVGELEQFLFTI 184 Saccharomyces c...
CCG84191     304 ------------------------------iqNPIQDFKIKSKIGeqd---------------kvSLTDLEKVEKFMLKE 338 Taphrina deform...
PSK77182     266 aseks-----tntpsvggnfvdyssptnheriDVIKSVKIESEIGelg---------------nnVLRNVGKVERFLIDQ 325 [Candida] auris
SGZ55475     261 gqsk-------vanmnggnfvdytgtnyreriDVIKSVKIDTEIGeme---------------nnILRNVGKVEKFLVEQ 318 [Candida] inter...
RKP31723     260 lheata----alkspaggnfvdysaagtreriDVIRNINIDTEIGeve---------------nnVLRNVGKVEKFLVEQ 320 Metschnikowia b...
QFZ30550     258 rrsdahsrgshippssggnitdyvpsnnkeriDVIRSVKIDTEIGeme---------------nnVLRNVGKVEKFLVEQ 322 Clavispora lusi...
CDR41237     213 ------------------qqlvsrdqsyrpriDIIRTLKIESEIGdsqg-------------dgsVLRNVGKVEKFLTDM 261 Cyberlindnera f...
XP_020050219 206 -------------------niaststsnrsliDIIKNIKIESEIGngepnnssssnnnnnnnhtsVLRNVGKVEKFLIEK 266 Ascoidea rubesc...
XP_012748204 141 ---------------------------eddqkGPIKDLKVEAQLGdas---------------qhVLNDLDKLINFVTDE 178 Acytostelium su...
Feature 1                        ##
5H5A_A       218 FRNLIRKEAaWPSWIDLD 235 Kluyveromyces lactis NRRL Y-1140
5YK7_B       185 FKDFLRKELaWPSWINLD 202 Saccharomyces cerevisiae S288C
CCG84191     339 IQSVVEKELvFPSYYTFL 356 Taphrina deformans PYCC 5710
PSK77182     326 LRTIIREEIaWPSWVCFD 343 [Candida] auris
SGZ55475     319 LRSLIRDEIaWPNWICLD 336 [Candida] intermedia
RKP31723     321 LRNIIRDEIcWPGWLAFD 338 Metschnikowia bicuspidata
QFZ30550     323 LRNIIRDETaWPSWICLD 340 Clavispora lusitaniae
CDR41237     262 LRQVLRDELaWPGWISLD 279 Cyberlindnera fabianii
XP_020050219 267 IQSILRDELgWPGWISFD 284 Ascoidea rubescens DSM 1968
XP_012748204 179 LREIIRQRLvYPNRINIP 196 Acytostelium subglobosum LB1

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