5YK6,5YK7


Conserved Protein Domain Family
SMP_Mmm1

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cd21671: SMP_Mmm1 
Click on image for an interactive view with Cn3D
synaptotagmin-like mitochondrial-lipid-binding protein (SMP) domain found in maintenance of mitochondrial morphology protein 1 (Mmm1) and similar proteins
Maintenance of mitochondrial morphology protein 1 (Mmm1), also called mitochondrial outer membrane protein Mmm1, or yeast mitochondrial escape protein 6 (YME6), is a mitochondrial outer membrane protein essential for establishing and maintaining the structure of mitochondria and maintenance of mtDNA nucleoids. It is a component of the ER-mitochondrion encounter structure/ mitochondrial distribution and morphology (ERMES/Mdm) complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria. Components of this complex are involved in the control of mitochondrial shape and protein biogenesis, and function in nonvesicular lipid trafficking between the ER and mitochondria. The Mdm12-Mmm1 subcomplex functions in the major beta-barrel assembly pathway that is responsible for biogenesis of all outer membrane beta-barrel proteins, and acts in a late step after the SAM complex. The Mdm10-Mdm12-Mmm1 subcomplex further acts in the TOM40-specific pathway after the action of the Mdm12-Mmm1 complex. This model corresponds to the SMP domain of Mmm1, which may be implicated in lipid transport.
Statistics
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PSSM-Id: 439227
Aligned: 75 rows
Threshold Bit Score: 155.756
Created: 2-May-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:lipid binding site [chemical binding site]
Evidence:
  • Structure:5YK6; Zygosaccharomyces rouxii Mmm1 binds phospholipids, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
5YK6_A        10 QIDDILEKTYYNvdth----------------------------paesLDWFNVLIGQTIQQLreeawKKDNIVYSLNAF 61  Zygosaccharomyc...
XP_004348776 150 RVSRQSEQAFFKalhqqtfa--------------------ktkatnetCLWLNVVLARIYHDVtssdaVMDRLLRFLKTS 209 Capsaspora owcz...
XP_014158140  15 VLLCLFIFIFYYfclrhnttkdgveiqkaayvqemptlesiadsepetCDWLSAVLQSVYVSLrh-rqLKAFVLNRIKYA 93  Sphaeroforma ar...
KYQ90963      73 ILIDISDKPPTSie---------------------------------tCHWINFITSRILSDInkstqFSEKIYNLLNNT 119 Tieghemostelium...
EPZ32930      30 LVSDVIDSSMYNeddte---------------------------npdtIEWLNSLVRSILFRFktsskLQNLLIEKMDEI 82  Rozella allomyc...
PJF19254      31 LVLLLLARLLFFrsptplepirfpskpks---kkapspsmpilpgresCVWVNSILVQLLGPLkt-llLDGDTLEHLSAL 106 Paramicrosporid...
AKN09686      50 LASALLADAAVSedle----------------------------lfekAEWLNLFAGRIFAEVst-paFQEHTWRLLTEK 100 Acanthamoeba ca...
ORX82949      71 IHDTVLNKLEYNlyth----------------------------psesCDWINVLIAIFIESYrrdntFKQNVVNKINNI 122 Anaeromyces rob...
PIA16574     129 MHKEILARTGYSlhah----------------------------gpesCNWLTVFLAQIIAKFradaeRHDRLVRVISEA 180 Coemansia rever...
KXS18206     320 LIARLLPSTPGQppppdvlth-------------------lasvtpesCTWVNLLLAQLVSRCrqdrvFAEGIVEVVGEM 380 Gonapodya proli...
Feature 1                                                                                        
5YK6_A        62 IERkaqeLPSYLDSIKITELDIGhdfPIFSNCRIQYspns------ngrkLEAKIDIDLnDRLAVGIETRLLLNypkp-l 134 Zygosaccharomyc...
XP_004348776 210 LNSa--rNPPFLGPISVESLVLGdaiPVIENVVVNTdynpsg---sqpldLRAVFTIDFqGEIALTCNTSLVLNwpvd-g 283 Capsaspora owcz...
XP_014158140  94 LSGd--dLPDFIGSIRIVDFTLPtemPQLREAAIQDveg---------snMTLLARVGWvGTMSVSVEVDVVLNypva-r 161 Sphaeroforma ar...
KYQ90963     120 IFDen-sKPDFIGKIQFSDISYGtttPEIGTVKLISppd--------spvSVLEFDIIYsGDASITVYTELWLNwpqk-h 189 Tieghemostelium...
EPZ32930      83 LNNe---RLSYLGRFVITNLEFGkspPRIEKISECSrvpdkigtlketknVDYEILFSVkDCANIGIETELILNwpqa-s 158 Rozella allomyc...
PJF19254     107 LNGyv-gGSDMVGTMEILKFELGdscPQVRWIETLSe-------------ASWEIQIEWnDVAELDLDTAVILSwpprqh 172 Paramicrosporid...
AKN09686     101 LNAv--dKPNLIGPIVIEDFSFGtgvPRIEGVASFKtg----------keLELVLDVSYdGGALFAVQTELWLNlptler 168 Acanthamoeba ca...
ORX82949     123 LSDtq-aKYSFIAPIILTDFALGdeyPQISKAKISQgdh---------hgMTTEFHIDYnDCLILGVDTNLMINwprp-c 191 Anaeromyces rob...
PIA16574     181 LNGe--lRPSVIDSIRITQFSLGsdfLRIVSARMVPaag--------plgMRAELELALhDEITLGFNTRVLVNwprt-a 249 Coemansia rever...
KXS18206     381 SNAr---RPGWLGPITITDFSMGdefPSVKVARVRParg--------gasVRVELELSLhDNISLGLDTFVVVNwpkp-l 448 Gonapodya proli...
Feature 1                              #                                                         
5YK6_A       135 tasLPINVTVSIIRFQACLTVSLtkaeefvptsp---------------------------------------------- 168 Zygosaccharomyc...
XP_004348776 284 lasTSVTATVRLTSVRAKVQLHLpcpirst-------------------------------------------------- 313 Capsaspora owcz...
XP_014158140 162 favMPLALSVTLQRFEGLMRIFLpgq------------------------------------------------------ 187 Sphaeroforma ar...
KYQ90963     190 tacLPVKTKLSIKQFTGKFILYIpnn------------------------------------------------------ 215 Tieghemostelium...
EPZ32930     159 satLPISLFFKLNEVKGKAIINFanv------------------------------------------------------ 184 Rozella allomyc...
PJF19254     173 lasLPCSFSFAVKSVMATLKVVLe-------------------------------------------------------- 196 Paramicrosporid...
AKN09686     169 lasLPVSMSVSLAHFRGRVSLTVple------------------------------------------------------ 194 Acanthamoeba ca...
ORX82949     192 iaaLPVSLSISLLHFSGKIMIEYitpi----------------------------------------------------- 218 Anaeromyces rob...
PIA16574     250 vaaLPVSMAISLVKFTGTVAIEFdce------------------------------------------------------ 275 Coemansia rever...
KXS18206     449 iasLPVGITVSVVKFEGKIALEFvtetvpiapprapaaphtngdvppgtgagategtappaapsappptspvdlpdaadd 528 Gonapodya proli...
Feature 1                                                                    #                   
5YK6_A       169 --------------------------------------------------esvdeddndgYFLMFSFAPe-YRMEFETQS 197 Zygosaccharomyc...
XP_004348776 314 -----------------------------------------------------dmpeapeNMFSFAFVEe-PQFSFTTDT 339 Capsaspora owcz...
XP_014158140 188 ----------------------------------------------------------igTDMSVCFDGd-PILDFQLGT 208 Sphaeroforma ar...
KYQ90963     216 ----------------------------------------------------------snPTCSLYLKEq-PNLTLRMIT 236 Tieghemostelium...
EPZ32930     185 ---------------------------------------------------------gsqTFFEFCFSEe-PFIDIGIGS 206 Rozella allomyc...
PJF19254     197 -----------------------------------------------------------gDKMYISALSdgFELDLRIHS 217 Paramicrosporid...
AKN09686     195 ----------------------------------------------------------sdPECTLAFAEe-PQLDFRIGS 215 Acanthamoeba ca...
ORX82949     219 --------------------------------------------------------dsnnKYILISLSDd-YQLELDVKT 241 Anaeromyces rob...
PIA16574     276 ---------------------------------------------------------saePSLSVSILPd-YVLEFDVQT 297 Coemansia rever...
KXS18206     529 ffssttsallsnilpgtivvdgtagvastppaaavgggstgsgtgatpamgtdvpattteISLRVCLLPd-FQLDLDVRS 607 Gonapodya proli...
Feature 1                                                ######
5YK6_A       198 LIGarskLENIPKIGSLVEYQIKKWFVercvEPRFQFIKLPSVWPR 243 Zygosaccharomyces rouxii CBS 732
XP_004348776 340 AIGqr-vHLSSEKLASIITTNVRKALInkcvLPAQIRFQLFSELVE 384 Capsaspora owczarzaki ATCC 30864
XP_014158140 209 VIGaatrVHDPPKLLEIVVGRVHRTIHdklvSPNSLSFAIPADILT 254 Sphaeroforma arctica JP610
KYQ90963     237 KMGyetvLKEPGKIGSFIQNHLLKFINqklvAPNKINFNLFSFLHP 282 Tieghemostelium lacteum
EPZ32930     207 LIGnktkLKDVAKLSRLIRIKLRNVIKqkltRPNVFRYQINVLSDL 252 Rozella allomycis CSF55
PJF19254     218 LIGhrskLKDIPKLTSVLRERLRGVIEqkliDPHRIEMDVGEMARK 263 Paramicrosporidium saccamoebae
AKN09686     216 LIGydyqLRDVPKISNFIINKIRSVIReeavLPKAFSFHLPLSGRP 261 Acanthamoeba castellanii
ORX82949     242 LLGhrtkIKDPEKLSNIVIGVINNFLRkefvYPNYKRFDIPNKPKI 287 Anaeromyces robustus
PIA16574     298 LIGskakVQNLPMLTSVISRKLQAAFAkelvMPNEKRVPIKHPFTP 343 Coemansia reversa NRRL 1564
KXS18206     608 MVGhrtkVKDLPRLTSMISAWIKERLVgpavEPGGFTVAIPWGLGS 653 Gonapodya prolifera JEL478

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