5TOD


Conserved Protein Domain Family
SMP_C2CD2-like

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cd21664: SMP_C2CD2-like 
Click on image for an interactive view with Cn3D
synaptotagmin-like mitochondrial-lipid-binding protein (SMP) domain found in C2 domain-containing protein 2-like (C2CD2L) and similar proteins
This family includes C2 domain-containing protein 2 (C2CD2) and C2CD2-like (C2CD2L). C2CD2 (also called transmembrane protein 24-like or TMEM24L), may be a lipid-binding protein that shows high sequence similarity with C2 domain-containing protein 2-like (C2CD2L; also called transmembrane protein 24 or TMEM24). C2CD2L is a lipid-binding protein that transports phosphatidylinositol, the precursor of phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2), from its site of synthesis in the endoplasmic reticulum (ER) to the cell membrane. It is a Ca2+-regulated component of ER-plasma membrane contacts in mammalian neurons. This model corresponds to the SMP domain of C2CD2 and C2CD2L which binds glycerolipids with a preference for phosphatidylinositol (PI). The bound PI is then transferred to the plasma membrane (PM) where it is converted to phosphatidylinositol-4,5-bisphosphate [PI(4,5)P2] to replenish pools of this lipid hydrolyzed during glucose-stimulated signaling. PI(4,5)P2 is required for Ca2+-dependent exocytosis; hence, the SMP domain of TMEM24 is essential for sustaining the intracellular Ca2+ oscillations that trigger bursts of insulin granule release and subsequent insulin secretion.
Statistics
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PSSM-Id: 439224
Aligned: 11 rows
Threshold Bit Score: 203.742
Created: 21-Apr-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
putative lipid
Conserved site includes 27 residues -Click on image for an interactive view with Cn3D
Feature 1:putative lipid binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         #  ##   #   #                     #     #                    #  
5TOD_F         14 VRGLLASLFAFK---SFRENWQRAWVRALNEQAc--rNGSSIQIAFEEVPQLp-PRASISHVTCVDQSeHTXVLRCQLsA 87   human
Q9Y426         59 GSDALLSWILTLg--SWRSQWQAAWVTALNEEAe--rKGGPPFLSFEEDPRQqaLELVVQEVSSVLRSaEEKVVVCHVvG 134  human
XP_030833345  132 WLNSVVAWLFTQhsqQSPGQLASSWLKALNEESr--kHGSSVQVTFDRIKPGs-APPKFQHVQAVAGPkDHLIVTCQLeS 208  purple sea ur...
XP_022255059  119 WINNSLIWVYSK---CNSNFLVETWLSALNDKAkkasAENGVLVKFEQVQAEd-FPLNLTDISTSPELnNNVTTICTVkS 194  Atlantic hors...
ELU12045       94 WLNAVIAWIHGHy--RNTPEIIDTWLRALSEEAkh-hAVGEYQMRFDRIQSGc-PPPRITKVATDASSpDSMTVRADVeC 169  Capitella teleta
RUS90187       98 WFNNALNWFYLHy--YYSPEFVEEWLKSLNEQLt--kLGGPVQAKLERIQSGs-LPPRVTHVSCEASPsDTYIIHAKLeS 172  eastern emera...
PIK60801      122 WVNSIAQWIYSQqslCTPQQVSSSWLKALNDEAk--rQGSSVQVTFEAMALGp-VPPKFSNITIETEPnNVLTVTCDLqA 198  Japanese sea ...
XP_022107444  123 WLNSVVAWMYMHq-sQAPGQLLTAWLKALNEQTr--kRGSSVQVTFDRLKAGs-LPPKFSAIRAEAGPrDLLTVTCQVeA 198  crown-of-thor...
XP_022321168   97 WLNSALNWFYLHy--DKFPEFVDAWVLGLNDQTt--kLGGPVQLRFERVKSGs-LPPKFSEVTFQAGPeDRYVVKCKVdS 171  eastern oyster
XP_022254221  153 WINSSLNWVYAQ---CNTNLLVETWLCALNDRArrasAENGVLVEFENFQPGs-LPPKLTDLSTSPELnNNIITICRVkS 228  Atlantic hors...
XP_019630715  104 WVNTTLTWLRTQq--HQTPELVKSWLKALNEQAr--rNGSSLQLTFDKIKEGs-LPPKFTTINSTIADdGSLVIGCYVeW 178  Belcher's lan...
Feature 1           # # #                   # #   # #           # # #         #                   
5TOD_F         88 EEVRFPVSVTQQspaavsXETYHVTLTLPPTQLEVNLEEipgEGLLISWAFTdRPDLSLTVLPKlqare--rgeeQVELS 165  human
Q9Y426        135 QAIQFLVSETPAlg--agCRLYDMRLSPFHLQLEFHMKEk-rEDLQISWSFIsVPEMAVNIQPKalged-qvaetSAMSD 210  human
XP_030833345  209 AGFGFIVFATQQtaasvkLSTCDVSVNRLSGKVRCQVRGl-gEEWHLAANWErRPDLQLNIKPQknsn---trndGVDLV 284  purple sea ur...
XP_022255059  195 EGLRFQVSAIHQnepdtsSVQYDVNIVKLEGKLKISGDT---EELLFFVSFVdKPDMKLNIKPVhtsp----dllTLEED 267  Atlantic hors...
ELU12045      170 SECVLQVALIQQtatsvkVSNCDVSLTKLSGQLRLHGTCv-nEEIQLAVGFVaPPQMTVTAKPRny-------daNLDQR 241  Capitella teleta
RUS90187      173 RDLSFVVFASQQthegvkLTNCTASVLRLKGTMRVQSYRd-gADVKICFNFEgKPEIKVQVKPLnpyq---eandLVDLG 248  eastern emera...
PIK60801      199 EGIDFGVFASQHtastvkVSNCNATVQKLSGKVQCIIRTf-gEDWHITATLEeDTVLHLKITPQitq------neSVDIH 271  Japanese sea ...
XP_022107444  199 TGVAFVIFATQQtassvkLSTCDVAIEKLIGKVQCKVQClsdELLQVNAAFEsKPDLSLTVRPQtss-----kndPVDLL 273  crown-of-thor...
XP_022321168  172 KDLSFAIFASQQttegvkLTNLTTSILKLKGSLRLECFNr-gNDMMAKVAFEgRPDVRIVGKPVnpyq---dpsdLVDIE 247  eastern oyster
XP_022254221  229 EGLRFKILTTRKigqdmtSVHYDLSIERLEGKLKALGNT---EELLFLVSFVdRPDIKLTLKPSygspklltpdqRSMED 305  Atlantic hors...
XP_019630715  179 LRLGLTVFATQQtpqtikLAICDVDVKLTGECQFKASVQs--EEVHVTGSFPkEPKIDINVKQPags-----eedGVDTG 251  Belcher's lan...
Feature 1              #  ##    # ####    
5TOD_F        166 TIEELIKDAIVStQPAXXVNLRAC 189  human
Q9Y426        211 VLKDILKHLAGSaSPSVVLITKPT 234  human
XP_030833345  285 VVEEILRNAIMAaTFNLSLPMRSL 308  purple sea urchin
XP_022255059  268 TIVDTITNAIGTaIVDIYFADQAD 291  Atlantic horseshoe crab
ELU12045      242 LVENMVRSAVAGaLLNMALPSHGG 265  Capitella teleta
RUS90187      249 VVEFNVRNAICLaKTVFTVTHLLM 272  eastern emerald elysia
PIK60801      272 AMEAIIRNAILSaTFTTVIPTRAL 295  Japanese sea cucumber
XP_022107444  274 LVEEIVRGAIMGaMTCVDLSTKTV 297  crown-of-thorns starfish
XP_022321168  248 VVEEVVRNAICLaTTEFNLTKWIT 271  eastern oyster
XP_022254221  306 VIVDIIINSIATaSVDFHFVKQTD 329  Atlantic horseshoe crab
XP_019630715  252 IVQGLVRDTLAGaVLTISLSLQSM 275  Belcher's lancelet

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