Conserved Protein Domain Family

cd21619: RRM1_Crp79 
RNA recognition motif 1 (RRM1) found in Schizosaccharomyces pombe mRNA export factor Crp79 and similar proteins
Crp79, also called meiotic expression up-regulated protein 5 (Mug5), or polyadenylate-binding protein crp79, or PABP, or poly(A)-binding protein, is an auxiliary mRNA export factor that binds the poly(A) tail of mRNA and is involved in the export of mRNA from the nucleus to the cytoplasm. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The model corresponds to the first RRM motif.
PSSM-Id: 410198
Aligned: 5 rows
Threshold Bit Score: 112.619
Created: 27-Feb-2020
Updated: 25-Oct-2021
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
Format: Row Display: Color Bits: Type Selection:
Q9P6M8         16 SSTIYVGNIDsrlSDEEIIKHFSKYGqVESIFRRlldsfypkekakpfkppkngvQYGFVKFVnaESIEEVLKDAkgmtL 95   fission yeast
RIB16542       33 SKTIYVSNIAyssNEDGLEKLGSSYGkVESVRLPrdye-------------grsrGYGFIEYSqeEEAERAMEGLngyvF 99   Gigaspora rosea
Q9USY2        756 GRELYVTNIDfkvNEKDVETFFRDYGqVESVRIPkrfn--------------qhkGFGYVVMTtnQDAENALSAAgk-qL 820  fission yeast
XP_018226797   65 SNAIYVGNLEmtiNNDALMKIFGRFGtIESVYRPpihtdk----------adrttHFAFIKYTdaESAQRAMQQAdnilL 134  Pneumocystis ...
XP_007873410   65 SNAIYVGNLEmtiNNDALMKIFGRFGtIESVYRPpihtdk----------adrttHFAFIKYTdaESAQRAMQQAdnilL 134  Pneumocystis ...
Q9P6M8         96 GQRKLTIK 103  fission yeast
RIB16542      100 EGRELRVA 107  Gigaspora rosea
Q9USY2        821 GNRVLNVV 828  fission yeast
XP_018226797  135 GRRRLVVR 142  Pneumocystis carinii B80
XP_007873410  135 GRRRLVVR 142  Pneumocystis murina B123
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