Conserved Protein Domain Family
RRM_ScJSN1_like
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cd21616: RRM_ScJSN1_like 
RNA recognition motif (RRM) found in Saccharomyces cerevisiae protein JSN1 and similar proteins
JSN1, also called Pumilio homology domain family member 1 (PUF1), is a member of the PUF family of proteins. It facilitates association of Arp2/3 complex to yeast mitochondria. It may play a role in mitosis, perhaps by affecting the stability of microtubules. Members in this family contain an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Links
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Statistics
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PSSM-Id: 410195
Aligned: 6 rows
Threshold Bit Score: 179.183
Created: 19-Feb-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
P47135        311 DEIDPQSINWVTmd-ptVPSINQISNLl-PTNTISISNVFPLQhqqpq------lnnaiNLTSTSLATLCSKYGEVISAR 382  Saccharomyces...
SMN20853      393 DDIDPRSISWVTtn-siVPPINQINSLl-PTNAIALTNIYPLQqtepq------yintvNLTSTSLASICMKFGNVISVR 464  Kazachstania ...
XP_022465257  172 DDVDPTSLNWITtnqknVPPANLTATLi-PTSTIAVSNIFPMQtqsvm------wsnamNMTSVVLGTLFSQFGKIVSVR 244  Kazachstania ...
XP_003672204  358 DNIDPSSISWITts-tmVPQIYQVNTLl-PTNTLLFSNILPIQplsqlqqqqkqqhiprNLASTSLATICSRFGRIISSR 435  Naumovozyma d...
XP_003674416  312 DNVDPMSLNWVSas-paVPSANRVGNLg-PTNTILFTNIFPVPqhslqa----qpmvpaPITSASLASLCSKFGHVISSR 385  Naumovozyma c...
OBA25232      235 DDVEPTSFNWITny-pyAPKINYVNNFlqPTNTICVSNIFSIQktqnl-------pnfiNLTSFALNSLFSQFGDIITIK 306  Hanseniaspora...

P47135        383 TLrn--lNMALVEFSSVESAVKALDSLQGKEVSmiGAPSKISFAKILP 428  Saccharomyces cerevisiae S288c
SMN20853      465 TIrd--lNIALVEFDSIDIARNALESLQGKDISilGYSSSISYAKILP 510  Kazachstania saulgeensis
XP_022465257  245 TLqn--lFMAIIEFESVESAILALETMQDKEISivGVPSRITFARILS 290  Kazachstania naganishii CBS 8797
XP_003672204  436 TLkg--mDMALIEFESIDSAITCLEALQGNEISaiGLPTTITFAKILP 481  Naumovozyma dairenensis CBS 421
XP_003674416  386 ILgglefPLALVEFNSIEAAIHTMENLQGRDLSgaGVPTILAFAKILP 433  Naumovozyma castellii CBS 4309
OBA25232      307 TLyg--lNLALIEFKYVDSAKLAIDVMNGKSISt-SIPSDVVFAKIIP 351  Hanseniaspora valbyensis NRRL Y-1626
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