Conserved Protein Domain Family
RRM_AtRDRP1_like

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cd21612: RRM_AtRDRP1_like 
RNA recognition motif (RRM) found in Arabidopsis thaliana RNA-dependent RNA polymerase 1 (AtRDRP1) and similar proteins
AtRDRP1, also called RNA-directed RNA polymerase 1, is an RNA-dependent direct polymerase involved in antiviral silencing. It is required for the biogenesis of viral secondary siRNAs, process that follows the production of primary siRNAs derived from viral RNA replication. Members in this family contain an RNA recognition motif (RRM), also called RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 410191
Aligned: 6 rows
Threshold Bit Score: 74.0383
Created: 19-Feb-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9LQV2       5 IQVFGFPng-vsAEEVKKFLerltgsGTVYAIKVRqpkkggprVYAIVQFTserhtrliitaAAERLYYGrsy-lkAFEV 82   thale cress
Q8L7S3     172 KCLVHLPnk-wqSDELKKFLge---qGVLYKSAKKr-------RGMIVGFVtf--------eNAEQLQSGvei-ldGKTV 231  thale cress
Q9USP9     489 TKLRVINvspekNEALLQYLft---vGGYEEITEPs------tTERLISFQnr--------nSAEKFFGGvrnvekLQEL 551  fission yeast
XP_501137  397 KDVLISPvtadkQEHIRAHLvs---vGEYSNVAQAs------gDSVVVSFPdr--------rAAEKFFYGsadipdVGKV 459  Yarrowia lipolyt...
EGG11156   581 LSVRDVPnf-eaQEKIRKHLeq---fGTIVAVAKMeeneeegkDDFTIKFStr--------aSAEKALAHgkdvpeVGKI 648  Melampsora laric...
OAV94550   612 LAVQLVPss-aaRETLKAYLeq---fGTIVAFAPLsed--esvFDVSVKFStr--------aAAEKALANgleipeVGKV 677  Puccinia tritici...
Q9LQV2      83 EQDIV 87   thale cress
Q8L7S3     232 NSSNL 236  thale cress
Q9USP9     552 ELAWV 556  fission yeast
XP_501137  460 DKQWF 464  Yarrowia lipolytica CLIB122
EGG11156   649 KMNWI 653  Melampsora larici-populina 98AG31
OAV94550   678 TMNWV 682  Puccinia triticina 1-1 BBBD Race 1
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