5X8R,5MMJ


Conserved Protein Domain Family
RRM2_PSRP2

?
cd21610: RRM2_PSRP2 
Click on image for an interactive view with Cn3D
RNA recognition motif 2 (RRM2) found in chloroplastic plastid-specific 30S ribosomal protein 2 (PSRP-2) and similar proteins
PSRP-2, also called chloroplastic 30S ribosomal protein 2, or chloroplastic small ribosomal subunit protein cS22, is a component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus. It binds single strand DNA (ssDNA) and RNA in vitro. It exhibits RNA chaperone activity and regulates negatively resistance responses to abiotic stresses during seed germination (e.g. salt, dehydration, and low temperature) and seedling growth (e.g. salt). PSRP-2 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The model corresponds to the second RRM motif.
Statistics
?
PSSM-Id: 410189
Aligned: 6 rows
Threshold Bit Score: 135.828
Created: 19-Feb-2020
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                               # #  
5X8R_v    120 SPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSnGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 198 spinach
5MMJ_v    182 SPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSnGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260 spinach
P82277    182 SPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSnGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260 spinach
Q8VYM4    175 SPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKStGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253 thale cress
ABK25816  170 SPYKVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSgGYGFVSFSSEADVEAAISAFNNVVLEGKPMRVNVT 248 Sitka spruce
OAY77157  176 SPHKVYVGNLAKTVTSELLTKFFSGKGKVVSAKVSRVPGTSKSsGFGFVTFSSDEDVEAAISSFNNAVLEGQKIRVNKA 254 pineapple

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap