5X8R


Conserved Protein Domain Family
RRM1_PSRP2_like

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cd21609: RRM1_PSRP2_like 
Click on image for an interactive view with Cn3D
RNA recognition motif 1 (RRM1) found in chloroplastic plastid-specific 30S ribosomal protein 2 (PSRP-2) and similar proteins
PSRP-2, also called chloroplastic 30S ribosomal protein 2, or chloroplastic small ribosomal subunit protein cS22, is a component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus. It binds single strand DNA (ssDNA) and RNA in vitro. It exhibits RNA chaperone activity and regulates negatively resistance responses to abiotic stresses during seed germination (e.g. salt, dehydration, and low temperature) and seedling growth (e.g. salt). The family also includes Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and Arabidopsis thaliana chloroplastic 31 kDa ribonucleoprotein (AtCP31A). NsCP33 may be involved in splicing and/or processing of chloroplast RNA's. AtCP31A, also called RNA-binding protein 1/2/3 (AtRBP33), or RNA-binding protein CP31A, or RNA-binding protein RNP-T, or RNA-binding protein cp31, is required for specific RNA editing events in chloroplasts and stabilizes specific chloroplast mRNAs, as well as for normal chloroplast development under cold stress conditions by stabilizing transcripts of numerous mRNAs under these conditions. CP31A may modulate telomere replication through RNA binding domains. Members in this family contain two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The model corresponds to the first RRM motif.
Statistics
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PSSM-Id: 410188
Aligned: 8 rows
Threshold Bit Score: 128.692
Created: 24-Feb-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       #                                        #                              ####  
5X8R_v     23 RLYVGNIPRNLNNDELRTIVEEHG-AIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKP 101 spinach
P82277     85 RLYVGNIPRNLNNDELRTIVEEHG-AIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKP 163 spinach
Q8VYM4     77 RVYIGNIPRTVTNEQLTKLVEEHG-AVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKP 155 thale cress
ABK25816   74 RLYVGNIPRTSTNEELAKIFGECG-NVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQAAIEKMNGTEIGGRVIKVNITEKP 152 Sitka spruce
P19684    115 RLYVGNLPFSMTSSQLSEIFAEAG-TVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVP 193 wood tobacco
Q04836    151 KLFVGNLAYDVNSQALAMLFEQAG-TVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229 thale cress
EFJ06141    2 RIYVGNLSWNCDSEELAKVLQQAGiLAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQKLDGHIVQGRALKASFSQPY 81  Selaginella moelle...
NP_171616 109 ELYVCNIPRSYDIAQLLDMFQPFG-TVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDM 187 thale cress
Feature 1      
5X8R_v    102 L 102 spinach
P82277    164 L 164 spinach
Q8VYM4    156 I 156 thale cress
ABK25816  153 L 153 Sitka spruce
P19684    194 R 194 wood tobacco
Q04836    230 G 230 thale cress
EFJ06141   82 K 82  Selaginella moellendorffii
NP_171616 188 N 188 thale cress

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