2MZS


Conserved Protein Domain Family
RRM2_HRB1_GBP2

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cd21606: RRM2_HRB1_GBP2 
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RNA recognition motif 2 (RRM2) found in Saccharomyces cerevisiae protein HRB1, G-strand-binding protein 2 (GBP2) and similar proteins
The family includes Saccharomyces cerevisiae protein HRB1 (also called protein TOM34) and GBP2, both of which are SR-like mRNA-binding proteins which shuttle from the nucleus to the cytoplasm when bound to the mature mRNA molecules. They act as quality control factors for spliced mRNAs. GBP2, also called RAP1 localization factor 6, is a single-strand telomeric DNA-binding protein that binds single-stranded telomeric sequences of the type (TG[1-3])n in vitro. It also binds to RNA. GBP2 influences the localization of RAP1 in the nuclei and plays a role in modulating telomere length. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The model corresponds to the second RRM motif.
Statistics
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PSSM-Id: 410185
Aligned: 12 rows
Threshold Bit Score: 132.871
Created: 24-Feb-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2MZS_A         1 GSEVIVKNLPASVNWQALKDIFKECGNVAHADVELDgDGVSTGSGTVSFYDiKDLHRAIEKYNGySIEGNVLDVK 75  Saccharomyces cerevi...
P38922       260 THEVIVKNLPASVNWQALKDIFKECGNVAHADVELDgDGVSTGSGTVSFYDiKDLHRAIEKYNGySIEGNVLDVK 334 Saccharomyces cerevi...
CAH00379     242 GFEVFVAQLPFSVNWQELKDMFKPCGDVLHADVVTDrDGKSRGFGTVYMATkEQQNDAIRHWTGtEYKGRVLDVK 316 Kluyveromyces lactis...
P25555       218 GFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDfNGFSRGFGSVIYPTeDEMIRAIDTFNGmEVEGRVLEVR 292 Saccharomyces cerevi...
SCU90805     213 GYEVFIANLPFSISWQSLKDLFKECGVPTRADVKLDrNGRSRGFGTVIYETqEEAQAALDRFSGfELEGRILELK 287 Lachancea meyersii C...
XP_003675837 171 GYEAFVVNLPYSITWQNLKDIFRECGDVIRADVELDyNGYSRGFGSVIYANeEDMFKAIDSFNGaELEGRILEVR 245 Naumovozyma castelli...
XP_003980080 165 GYEAFVINLPYSITWQNLKDLFRECGDILRADIELDyNGFSRGLGSVLYATeDAMHRAIDTFNGyELEGRVLEVR 239 Naumovozyma dairenen...
SCW02593     245 GYEVFVANLPFSINWQALKDMFKECGIPIRADVKLDrDGRSRGFGTVIFQTiEEAHAAIEQYNGyELDGRILEVK 319 Lachancea fermentati
OEJ92408     283 GFEVFIANLPFSINWQALKDMFKKFGDVKRADVSLDhNQRSRGFGTVYFKTaKEAEDSIAYYAGlEMEGRRLDCK 357 Hanseniaspora osmophila
XP_003959138 227 GYEVFIINLPYSATWQDLKDLFRESGDVLRADIELDyNGYSRGFGNVFYATkEEMYSAIDRFNGyDWNGRILEVR 301 Kazachstania african...
SMN21937     215 AFEVFIINLPYSFSWQDLKDLFRECGNVLRADIDLDyNGYSKGFGNVFYGSeEEMFRAIDTFNGyNLQGRILEVR 289 Kazachstania saulgee...
KTB17801     216 GYELMILNLPYSISWQTLKTMFKEFGDVLKANVEVDsTGMSIGVGNVIFKNqEDMVKAYEHFNGfEIEGKVLEVR 290 [Candida] glabrata
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