2MZR


Conserved Protein Domain Family
RRM1_HRB1_GBP2

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cd21605: RRM1_HRB1_GBP2 
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RNA recognition motif 1 (RRM1) found in Saccharomyces cerevisiae protein HRB1, G-strand-binding protein 2 (GBP2) and similar proteins
The family includes Saccharomyces cerevisiae protein HRB1 (also called protein TOM34) and GBP2, both of which are SR-like mRNA-binding proteins which shuttle from the nucleus to the cytoplasm when bound to the mature mRNA molecules. They act as quality control factors for spliced mRNAs. GBP2, also called RAP1 localization factor 6, is a single-strand telomeric DNA-binding protein that binds single-stranded telomeric sequences of the type (TG[1-3])n in vitro. It also binds to RNA. GBP2 influences the localization of RAP1 in the nuclei and plays a role in modulating telomere length. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The model corresponds to the first RRM motif.
Statistics
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PSSM-Id: 410184
Aligned: 13 rows
Threshold Bit Score: 134.344
Created: 19-Feb-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2MZR_A        19 SNSIFVGNLTyDSTPEDLTEFFsqiGKVVRADIITSRGHHRGMGTVEFTNsDDVDRAIRQYDGAFFMDRKIFVRQDN 95  Saccharomyces cere...
P25555       121 ENSIFVRNLTfDCTPEDLKELFgtvGEVVEADIITSKGHHRGMGTVEFTKnESVQDAISKFDGALFMDRKLMVRQDN 197 Saccharomyces cere...
P38922       160 SNSIFVGNLTyDSTPEDLTEFFsqiGKVVRADIITSRGHHRGMGTVEFTNsDDVDRAIRQYDGAFFMDRKIFVRQDN 236 Saccharomyces cere...
XP_019040108  26 ENSIFVGNLPfDCDWSQLKDHFqgvGNVIRADIVTQNGRPRGMGTVEFSSkAEVERAISQFDHTPFLDRDIFVRQDN 102 Wickerhamomyces an...
ODV96324      79 GNSIFIGNLPfNCEWHDLKDHFkavGEIIRADIVTNHGKSRGMGTVEFTDkESVQKAIDEFNHTEFLSREIFVRQDY 155 Pachysolen tannoph...
ODV85037     108 ENSIFIGNLPyGTTWQDLKDFFkeaGEVVRADIVTSHGRPRGMGTVEFADrITAEDAITKFDRSVFRGREIFVREDL 184 [Candida] arabinof...
XP_003980080  67 DNRVFVGNLSfDTTAEDLVDYFsqvGEVVTADIITFKGRHKGLGTVEFTNaDDATEAIERCDNTHFMGRDIYVKDDQ 143 Naumovozyma dairen...
CCE88799     100 DNSIFIGNIPfSCTSKDIQELFkddFQLIKADIVTSRGRSRGMATVEFSNkEDVAKAISKFDHYEFLGREIFVRQDY 176 Millerozyma farino...
ANZ73351       8 TKGVFIGNLPfQCSWQQLKDHFssvGEVHRADIVTERGRSRGMGTVEFVNeEDVKLAIEKLDHTIFLDREIFVRQDY 84  Komagataella pastoris
XP_022459622  96 ENTVFVGNLPfSCEWYQLKDHFkeiGEVVRADIIVRGGRSRGMGTVEFQDyQTAQDAIARYDHTTFLEREIFVRMDQ 172 Kuraishia capsulat...
OBA29055     120 QNSIFIGNLPyNCTGEDLTDGFnkfGQVIRSDIVTQKGRHRGMGTVEFRDfAAVLKAIRKMNNEMFMGRIIFVRKDN 196 Hanseniaspora valb...
XP_003959138 127 DNSVFVGNLSfDCTGDDLRDLFssiGRVISANIYYSHGRSKGMGTVEFEDtADVDEAINQLNDTMFMGRNIFLKPDS 203 Kazachstania afric...
ONH65983      77 NNSIFVGNLGyDVDSQALRQYFggaGRIIRADVVTQGGRHRGMATVEFSNhDEVDRAISQFHQTDFNGRTIFVRQDN 153 Cyberlindnera fabi...
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