Conserved Protein Domain Family
VEFS-box_EMF2-like

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cd21553: VEFS-box_EMF2-like 
VEFS (VRN2-EMF2-FIS2-Su(z)12) box found in Arabidopsis thaliana Polycomb group protein EMBRYONIC FLOWER 2 (EMF2) and similar proteins
This subfamily includes a group of proteins similar to Arabidopsis thaliana Polycomb group (PcG) proteins, EMF2, Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2 (FIS2), and Polycomb group protein VERNALIZATION 2 (VRN2). EMF2 is involved in flowering processes by repressing unknown target genes and preventing reproductive development. It participates in PcG protein complex-mediated (probably in complex with EMF1) silencing of the flower homeotic genes AGAMOUS (AG), PISTILLATA (PI), and APETALA3 (AP3), as well as of some regulatory genes such as ABSCISIC ACID INSENSITIVE3 (ABI3), LONG VEGETATIVE PHASE1 (LOV1), and FLOWERING LOCUS C (FLC) during vegetative development, by mediating trimethylation of histone 3 lysine 27 on the AG chromatin (H3K27me3). FIS2 is required to prevent the proliferation of the central cell by repressing unknown target genes before fertilization. It regulates the anteroposterior organization of the endosperm. VRN2 plays a central role in vernalization by maintaining repressed the homeotic gene FLC, a floral repressor, after cold treatment. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. Members of this family contain a VEFS (VRN2-EMF2-FIS2-Su(z)12) box.
Statistics
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PSSM-Id: 439218
Aligned: 54 rows
Threshold Bit Score: 76.2107
Created: 6-Apr-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative trimer
Feature 1:putative trimer interface [polypeptide binding site]
Evidence:
  • Comment:based on the structure of human Suz12 VEFS-box in complex with histone-lysine-N-methyltransferase EZH2 and polycomb protein EED

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #########   # ### ##                     #### # #  #   # #          ##   #  #
Q8L6Y4       502 LQKRQFFHSHRAQPMALEQVLSDrdse-------------devDDDVADFEDRRMLDDFVDvt-------kDEKQMMHMW 561  thale cress
XP_005790447  97 GLARFYHPLEWGVPLREGPVEADp------------------vPPSWRHEADAWQLEQAADrirsrrgvgeAEAAFMDLW 158  Emiliania huxl...
XP_001745284 405 KGKRPVYRCPHFTAAVSDELDHDsdd---------------ddEGPWAELVQRQNFRELADin-------vSERTFMQLW 462  Monosiga brevi...
KAA0152991   787 QLVRPYFRSRSNAPIAPGEADDDsdd---------------dvSDTWALHRARSAIARFGDvq-------sAEREFMMLW 844  Cafeteria roen...
XP_013752636 518 TIQQEFFTMPEYSVLPPEAVGSTqre---------------pvDNRWLMEKRAAALRELGDvs-------eTEKTFMALW 575  Thecamonas tra...
XP_018475181 393 GHRKQKTPLRNPMPGPLKITDDAnsv---------------knEKSQIPPGGAKLYTQLVPpr------spAELQMMQMW 451  radish
PWA40888     377 FLEDEKYQLVNASYNKSDDFISQnfgiladedmefffcqtplqKGCYFHSHGAQMLNNLVDvt-------qDQEDFMNLW 449  sweet wormwood
KAA6426359   526 RPVPVYFHARSCSRMTPQEVSHIlqdpha--------vtdsddEEDDRERSKARAVRQLDKltg----vntAEKNLMLSW 593  Trebouxia sp. ...
OSX73797     118 SAGREYFHTGTLAPLTVKQSPHAelssd----------sedvvDEDWLHSMDAARLEALELp--------aHDVLFMTLW 179  Porphyra umbil...
OSX81056     642 FRRGAYFHTNTLERLAFPPPPTPdvgpd----------sedelEEAWMTSMDAARLRALPVp--------pRDVLFMGLW 703  laver
Feature 1        #  #               #####                    #### ### ######### #  ##   #  #  
Q8L6Y4       562 NSFVRKQRVl---------ADGHIPWACEAFSRLHgpimvrtphLIWCWRVFMVKLWNHGLLDARTMNNCNTFLEQL 629  thale cress
XP_005790447 159 NGAVQRSERsr------lvSDRCLPALCRAFAVQHaae---lrgLAAPFRSHLEVLRQHNLLHPEDVRDCLVLSSPD 226  Emiliania huxleyi...
XP_001745284 463 NAFRRRSAHrpetralldgRDQGVAAACVAFVNDYklll-sstgLARQCQLHMTMLWRLGLLPEPVLQELMSRLAGA 538  Monosiga brevicol...
KAA0152991   845 CGFVARFRLl---------SMGAAQRGVAAFARAHgvti-lrrrLRGCFLLHLLTMWDQGWLESPAVSAAMQIVDSY 911  Cafeteria roenber...
XP_013752636 576 NTFVSQLEVq--------lSDGRLAPALLVFVKECaqel-vvanLRNALVLHCTNLWNHGAISASDATHALETYDQQ 643  Thecamonas trahen...
XP_018475181 452 NSFVKERRVv---------ENGRISLGCEAFSKLHgplmvrnpdLLWCWTKYIWTLKIYGRIDDRTLKNCNLFIEQV 519  radish
PWA40888     450 NSFIRKQRLv---------AEADTPWACEAFLTEHgkdlvgtpmLMCSWRSFMTQLWKGGLIDVKTFTNCNKIIENI 517  sweet wormwood
KAA6426359   594 NMYLHDHPCl---------SDAQMGQRCIDFAAEQvqamradseLRRCFMVHLVNLWEFNIVSSDLVHACMVSIDAQ 661  Trebouxia sp. A1-2
OSX73797     180 TGYVDAVPSw---------GDRGAAFLLGSFFVARrrti-letgLLAQAVAHVEVMYTHGLFDVDAAAQAIGVLTDR 246  Porphyra umbilicalis
OSX81056     704 TAYVDAAPPw---------ADRSTAALVAGFVAARrgal-aaagLTGQAAAHVGLLWSYGLLDAAAAAEAVAAAAAA 770  laver

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