Conserved Protein Domain Family
SPOC_RBM15B

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cd21550: SPOC_RBM15B 
SPOC (Spen paralog and ortholog C-terminal) domain found in putative RNA binding motif protein 15B (RBM15B)
RBM15B, also called one-twenty two 3 (OTT3), is a paralog of RNA binding motif protein 15 (RBM15), which is also known as one-twenty two protein 1 (OTT1). Like RBM15, RBM15B has post-transcriptional regulatory activity. It is a nuclear protein that shares with RBM15, the association with the splicing factor compartment and the nuclear envelope, as well as the binding to mRNA export factors NXF1 and Aly/REF. RBM15B belongs to the Spen (split end) protein family, which contains a domain architecture comprising of three N-terminal RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal SPOC domain. This model corresponds to the SPOC domain that is involved in developmental signaling and has also been proposed to be a phosphorylation binding module.
Statistics
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PSSM-Id: 439213
Aligned: 6 rows
Threshold Bit Score: 295.229
Created: 3-Apr-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8NDT2       721 GWNGLLVLKNScFPTSMHILEGDQGVISSLLKDhts--gskLTQLKIAQRLRLDQPKLDEVTRRIKQgspnGYAVLLATQ 798 human
XP_007888771 670 AWNGVLVLKNScFPTNMHTLEGDLAVVNVLLKDftt--gvkVSQLKIAQRLRLDQPKLDEVTRRIKQgspdGYVVLLAVQ 747 elephant shark
XP_015148406 745 AWNGLLVLKNScFPTSMHILEGDLGVINGLLKDhss--ggkLTQLKIAQRLRLDQPKLDEVTRRIKQgspnGYAVLLATQ 822 chicken
XP_005992729 669 AWKGVLVLKNScFPTTMHILEGDLGILNILLKDyta--ggkISQLKIAQRLRLDQPKLDEVTRRIKQggpsGYAVLLATQ 746 coelacanth
XP_018114464 580 VWCGHLVLKNScFPTNLHFLEGDHDVPGALLKDrsstsagnLAQLKIAQRLRLDQPKLEEVTRKVRQgtagGYAVLLATQ 659 African clawed ...
RXM93838     668 AWQGILVLKNScFPTNMHVLEGSSGIVNILLKDyva--ggkITQLKIAQRLRLDQPKLDEVTRRIKQgspdGYAVLLAVQ 745 sterlet
Q8NDT2       799 atpsglg-tegmptvEPGLQRRLLRNLVSYLKQKQAAGVISLPVGGskgr-dgtGMLYAFPPCDFSQQYlqsalrtlgkL 876 human
XP_007888771 748 appraeg-gagavavEPGLQQRLLRNLVSYLKQKQAAGVISLPIGGpkdk-dntGMLYAFPPCEFSQQFlqaalrtlgkV 825 elephant shark
XP_015148406 823 sapggagaegtfpvvEPGLQRRLLRNLVSYLKQKQAAGVISLPVGGakgr-dstGMLYAFPPCEFSQQYlqsalrtlgkL 901 chicken
XP_005992729 747 apqgveg--geaapaEPGLQQRLLRNLVSYLKQKQAAGVISLPIGGpker-vnnGMLYAFPPCDFSQQYlqsalrtlgkL 823 coelacanth
XP_018114464 660 apqne-----gaipgEPGLQRRLLRNLVSYLKQKQAAGVISLPVGGsnkgrdpsGMLYAFPPCDFHQLYqksaq-rvvsK 733 African clawed ...
RXM93838     746 apqdk-----eapppEPGLQRRLLRNLVSYLKQKQAAGVIGLPLAGgkdr-dftGMLYAFPPCEFSQQYlqgalrtlgkL 819 sterlet
Q8NDT2       877 EEEHMVIVIVRD 888 human
XP_007888771 826 DEDHLVVVIVRD 837 elephant shark
XP_015148406 902 EEEHMVIVIVKD 913 chicken
XP_005992729 824 EEEHLVVVIVKE 835 coelacanth
XP_018114464 734 LEENMIIVLVKD 745 African clawed frog
RXM93838     820 EEEHLVIVIVRD 831 sterlet
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