Conserved Protein Domain Family
SPOC_RBM15-like

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cd21544: SPOC_RBM15-like 
SPOC (Spen paralog and ortholog C-terminal) domain found in RNA binding motif protein 15 (RBM15) and similar proteins
This subfamily includes RBM15, RBM15B, and similar proteins found in metazoans. RBM15, also called one-twenty two protein 1 (OTT1), is a novel mRNA export factor and component of the NXF1 pathway. It binds to NXF1 and serves as a receptor for the RNA export element RTE. It also possesses mRNA export activity and can facilitate the access of DEAD-box protein DBP5 to mRNA at the nuclear pore complex (NPC). RNA-binding protein 15B (RBM15B), also called one-twenty two 3 (OTT3), is a paralog of RBM15 and therefore has post-transcriptional regulatory activity. It is a nuclear protein that shares with RBM15, the association with the splicing factor compartment and the nuclear envelope, as well as the binding to mRNA export factors NXF1 and Aly/REF. Members of this family have a domain architecture comprising of three N-terminal RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal SPOC domain. This model corresponds to the SPOC domain that is involved in developmental signaling and has also been proposed to be a phosphorylation binding module.
Statistics
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PSSM-Id: 439207
Aligned: 22 rows
Threshold Bit Score: 133.944
Created: 3-Apr-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q96T37       787 AWQGMLLLKNSnFPSNMHLLQGDlqvassllv-----------------------------------------------e 819  human
Q5C326       190 AWDGAFYLKSSsFQCQMHVLRGDrslvdqfmfrklnpeasansdearhankksnkdkhislddndssesrddahsstksn 269  Schistosoma ja...
XP_002164038 453 VWRGAFALKNSaFPVKMHLIGGNpelanyylrg---------------------------------------------ig 487  Hydra vulgaris
XP_003387831 728 AWRGNLVLKNTgFPARLHLVGGDpsvaeyl-------------------------------------------------- 757  Amphimedon que...
XP_026696591 557 CWQGGFVLKNIaFPVLFFFLDGDmgvfnttta----------------------------------------------dp 590  vase tunicate
XP_029656863 400 VWKGAFMLKSSnIPVSFRFVRGNyqlvdyflykhti---------------------------------------ltnem 440  Octopus vulgaris
RMZ98934     262 NWSGQLTLKKNsFPVKFYLMAGNqqlaetf-------------------------------------------------- 291  Brachionus pli...
XP_009030710 388 IWEGNLAAKLStFPIKIHMQCGHvklidd--------------------------------------------------- 416  Helobdella rob...
VDP12611     190 CWIGTVVLKKSsYPVRCFKLYGDddlidayl------------------------------------------------- 220  Soboliphyme ba...
VDD81201     534 VWRAVFVLKKSnFSCRLHAVSGDsaladqlfprqrpkppqtppdd--------------------edengqddrrsapsp 593  Mesocestoides ...
Q96T37       820 gstggkvAQLKITQRLRLDQPKLDEVTRRikva----gpnGYAILLAVPgssdsrsssssaasdtatstqrpLRNLVSYL 895  human
Q5C326       270 ctnkdqaVCLRITQRMRLDPVKLDDVSERiqta----gpgGFCILLAVPphsilcnevg---dadnkqpqrpLRNLVGYL 342  Schistosoma ja...
XP_002164038 488 agagpafKVLNVTQRLRLDQSKLDEVARRvqha----gssGHCILLALAngddvele--------dsyqrrpLKSLVTYF 555  Hydra vulgaris
XP_003387831 758 lrgkdepCVLRITQRLRLEQPRLDEVNKRltia----gpnGHCILFALPgptlnhgspd---egddsmqlrpLRSLVSYL 830  Amphimedon que...
XP_026696591 591 nsptgrqTMFHLTQRLKLNEEKTKEVSRRmks-----cvnRTCLIVAVPgvpenlnttgt-isgpvptqhkpLRGLVKYF 664  vase tunicate
XP_029656863 441 ngkqkepVLLSIVHRLRLDPDKLGEVQNRidn-----sdgAYCVLVAFSsdcss--------------gqssLHNLVNYF 501  Octopus vulgaris
RMZ98934     292 lpahntdMNLHINQRIRLDSSKLDDIEKRlserfecddsvTYSVFVCVAtqltksdk--------svlhkrsLHNLVSYL 363  Brachionus pli...
XP_009030710 417 --llkglTTLKFNKLLQIDSPTFPSVINFins-----ddsECSLLFAVSseetkpe---------nsenikpFKSLLAYL 480  Helobdella rob...
VDP12611     221 rddhgdsVHLTINQRLKLDQPRPGDVQKWls-------spDYTFMLAAPnananvlapsd-tkggddhqmhnMKLLVKYF 292  Soboliphyme ba...
VDD81201     594 gdnsidpPLLRISQRMKMDPAKLEDVRKRmksv----gdsGYCVLLATEaaneiss----------dnhsrpLRDLINYL 659  Mesocestoides ...
Q96T37       896 KQKQAAGVISLPvggnk---------------------dkentGVLHAFPPCEFSQqfldsp------akalakSEEDYL 948  human
Q5C326       343 RAKDSAGVVLLNpsglnqndsg------------splsaeatsGVLYAFPPCDFALsllresa----pqlekdyCKDDHL 406  Schistosoma ja...
XP_002164038 556 RKKEAAGVIILStegpsg--------------------kqeetGMLHAFPPCAFSHqyllrta----pnigptpSKEDHL 611  Hydra vulgaris
XP_003387831 831 KQKEAAGIVALSssdigdggse-----------ngggvnkeviGVLHAFPPCEFSQaqlmkvi----pslslepSKEDHI 895  Amphimedon que...
XP_026696591 665 KEKEAAGIVSVPaittdtpkewd----------ktsykdrplsGVLHLFPPGPFAHeqllrig----pnlqpqyFADDYM 730  vase tunicate
XP_029656863 502 EEKNAAAVVVISvsysfgg------------------tekkstAALHAFPKCDFSRkllspvv----seesfnsFEDDFL 559  Octopus vulgaris
RMZ98934     364 NQKSAAGVVNLPddarvhanlnif-------tassnlssrvfkQLLAGFRAEQLSQ------------------EQDSFL 418  Brachionus pli...
XP_009030710 481 KKKQSVGVTLLPdnssp----------------------dkikGVIHWFAPELHTKdliqvlcp---kisedslLKQEYL 535  Helobdella rob...
VDP12611     293 MEKNAAGVVSVTpnqrvvkvqntehmpkaaatttstaaapftaGIVYAFPRCAFTRqllallcp---kvtvmeqCHDESL 369  Soboliphyme ba...
VDD81201     660 ASKEAAGVVLMNpeqqqqqqqd------------dgrgesestGVLHVLPPSDFAVsllveggatglqqknsavVGDKFL 727  Mesocestoides ...
Q96T37       949 VMIIVRG 955  human
Q5C326       407 AIILIRG 413  Schistosoma japonicum
XP_002164038 612 IVIIVKG 618  Hydra vulgaris
XP_003387831 896 VILLVKG 902  Amphimedon queenslandica
XP_026696591 731 VALLVKG 737  vase tunicate
XP_029656863 560 TVVIVGT 566  Octopus vulgaris
RMZ98934     419 ICVLLKS 425  Brachionus plicatilis
XP_009030710 536 FAVLSSV 542  Helobdella robusta
VDP12611     370 LVVLQKN 376  Soboliphyme baturini
VDD81201     728 VILLIRS 734  Mesocestoides corti
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