5WG6,5HYN,5WFC


Conserved Protein Domain Family
VEFS-box

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cd21521: VEFS-box 
Click on image for an interactive view with Cn3D
VEFS (VRN2-EMF2-FIS2-Su(z)12) box family
This family corresponds to a group of polycomb cluster proteins which control HOX gene transcription, as they function in heterochromatin-mediated repression. They are characterized by containing a VEFS-box in the C-terminal region, which is an acidic cluster and a tryptophan/methionine-rich sequence, the acidic-W/M domain. Some of these sequences are associated with a zinc-finger domain about 100 residues towards the N-terminus. Members include suppressor of zeste 12 protein (SUZ12) from vertebrates, plants, insects and fungi, as well as Polycomb group protein EMBRYONIC FLOWER 2 (EMF2), Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2 (FIS2), and Polycomb group protein VERNALIZATION 2 (VRN2) from plants.
Statistics
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PSSM-Id: 439215
Aligned: 23 rows
Threshold Bit Score: 107.778
Created: 3-May-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
trimer
Conserved site includes 56 residues -Click on image for an interactive view with Cn3D
Feature 1:trimer interface [polypeptide binding site]
Evidence:
  • Structure:5HYN; Homo sapiens Suz12 VEFS-box in complex with histone-lysine-N-methyltransferase EZH2 and polycomb protein EED, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #########   #  ### ##         #### # #  #   # #        ##   #  ##  #            
5WG6_A       727 RLYFHSDTCLPLRp-QEMEVDsed---ekDPEWLREKTITQIEEFSDvn-----eGEKEVMKLWNLHVMKhg-------- 789  human
5HYN_C         7 RLYFHSDTCLPLRp-QEMEVDsed---ekDPEWLREKTITQIEEFSDvn-----eGEKEVMKLWNLHVMKhg-------- 69   human
5WFC_B       803 QPLFDPLSKVQLLp-GQPLPQhp-----iDDSWLLLKHRDNLQDFIDlr-----pEEKEFLQEWDAFILRrh-------- 863  Chaetomium the...
Q8L6Y4       505 RQFFHSHRAQPMAl-EQVLSDrdse-devDDDVADFEDRRMLDDFVDvt-----kDEKQMMHMWNSFVRKqr-------- 569  thale cress
GAX26639     164 RIYYDSVFKVPRSd-AVWLVDvdsddearDHISSLEDTEAEINDFTDvt-----pGQKRFMKLWNHFLAHrsdg-----v 232  Fistulifera so...
VEU34570     639 RQYYHPNSKIPIQi-GHHDRDldd---esLYSWYHDYRKERIEDFDDlt-----eNEKKIESLWNRFLGCssv------- 702  Pseudo-nitzsch...
XP_002179873 104 RAYYHMTNFRKVAi-GEWMLDidpe-dsiDLMWRNQMDEAFLDDFDDit-----aSEKGFLKLWNDFIKRqp-------- 168  Phaeodactylum ...
XP_001014981 149 KQIFNQANIFTRKh-LNDLFEd------sDDEVQEEGLVTQIHKRNMqdvydmtpKDKKFTFLWNEFFIKlekqkikeki 221  Tetrahymena th...
GAU91020     556 RHYLHTSTVRSIRp-EQRWLQayd--sdeETEWQDEYEREKLHDFIDcn-----pQEKYFMSLWNAFTRRla-------- 619  Ramazzottius v...
OQV25251     475 VQMHGIRTCRPDLknLCDLDSd------dDDESQQIHRANCISEISDas-----dTEKAFMILWNRFLRTag-------- 535  Hypsibius duja...
Feature 1          #####                    #### ### ######### #  ##   #  #  
5WG6_A       790 fiADNQMNHACMLFVENYgqki-ikknLCRNFMLHLVSMHDFNLIsIMSIDKAVTKLREM 848  human
5HYN_C        70 fiADNQMNHACMLFVENYgqki-ikknLCRNFMLHLVSMHDFNLIsIMSIDKAVTKLREM 128  human
5WFC_B       864 isSEQYLPRYFLRFVREKadwlvskrsRGEEFSKLVATLLARRVLpERVVIEATQVLNDA 923  Chaetomium thermophilum var. therm...
Q8L6Y4       570 vlADGHIPWACEAFSRLHgpimvrtphLIWCWRVFMVKLWNHGLLdARTMNNCNTFLEQL 629  thale cress
GAX26639     233 tpAPKQLPSLCVDFARYFaqcs-tcndDEEQFIRCLLNLMDENYLgALQAGEIIAVYRRA 291  Fistulifera solaris
VEU34570     703 vvEDRAVPKICMSLIRKHsad---lsgLEWEFYQLVITLWERRMLsVIDVEQCMLLYHSL 759  Pseudo-nitzschia multistriata
XP_002179873 169 htPQKDIPKLTIEFVTQNyeii-ckegYHEEMLKHVTNLWDEGHInGDDLFATIVAYNNL 227  Phaeodactylum tricornutum CCAP 1055/1
XP_001014981 222 piKRSDMYGYIQQFMDENiqe---linLHPQFVIHLFTMQDNGILdSEQIARCLKYLKDY 278  Tetrahymena thermophila SB210
GAU91020     620 plMSFKMQDVLCRFVLQHavei-elheAYPALVAQLAILRRDTVItAPQSIQVIQAYRNT 678  Ramazzottius varieornatus
OQV25251     536 yiPYHRMFATLQQFVRAHgtdi-elmdCYSVFVAHVVVFQRDGYIlKEELRNIMKYYRQI 594  Hypsibius dujardini

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