Conserved Protein Domain Family
betaCoV_Nsp2_MERS-like

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cd21517: betaCoV_Nsp2_MERS-like 
betacoronavirus non-structural protein 2 (Nsp2) similar to MERS-CoV Nsp2, and related proteins from betacoronaviruses in the C lineage
Coronavirus non-structural proteins (Nsps) are encoded in ORF1a and ORF1b. Post infection, the genomic RNA is released into the cytoplasm of the cell and translated into two long polyproteins (pp), pp1a and pp1ab, which are then autoproteolytically cleaved by two viral proteases Nsp3 and Nsp5 into smaller subunits. Nsp2 is one of these subunits. This subgroup includes Nsp2 from Middle East respiratory syndrome-related coronavirus (MERS-CoV) and betacoronaviruses in the merbecovirus subgenus (C lineage). It belongs to a family which includes Severe acute respiratory syndrome coronavirus (SARS-CoV) Nsp2, and Murine hepatitis virus (MHV) Nsp2 (also known as p65). The function of Nsp2 remains unclear. SARS-CoV Nsp2, rather than playing a role in viral replication, may be involved in altering the host cell environment; deletion of Nsp2 from the SARS-CoV genome results in only a modest reduction in viral titers. It has been shown to interact with two host proteins, prohibitin 1 (PHB1) and PHB2, which have been implicated in cellular functions, including cell-cycle progression, cell migration, cellular differentiation, apoptosis, and mitochondrial biogenesis. MHV Nsp2/p65, different from SARS-CoV Nsp2, may play an important role in the viral life cycle.
Statistics
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PSSM-Id: 394868
Aligned: 10 rows
Threshold Bit Score: 1214.96
Created: 8-Apr-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure of SARS-CoV-2 Nsp2 with bound zinc ion

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
AUM60023      196 NFTPIDQYMCGSDGKPIADYAFIADKEKLISLTDVATDVQSRADqngYITLKEKLYRICWYVERKDVPYTKQTIFTINSV 275  Middle East r...
YP_009047202  194 DVTPVDQYMCGVDGKPISAYAFLMAKDGITKLADVEADVAARADdegFITLKNNLYRLVWHVERKDVPYPKQSIFTINSV 273  Middle East r...
K9N7C7        194 DVTPVDQYMCGVDGKPISAYAFLMAKDGITKLADVEADVAARADdegFITLKNNLYRLVWHVERKDVPYPKQSIFTINSV 273  Betacoronavir...
AVV62524      197 DFTPIDQYMCGKDGNPIRDYAALAAKEGLNSLADVLTDVSARADaegYINFKEKLYRIVWHVERKNVPYAKQTIFTVNSV 276  Middle East r...
QCC20711      201 DVIPVDQYMCGFDGVPVKPYLDLATKEGLTKLADVEADVRSRVDkhgFLIFKGVTYRVVWFTERKDVDYGKQTLFTMNCV 280  Hedgehog coro...
QGA70701      201 DFIPVDQYMCGFDGQPVKAYLSLVTKEGLTTLSDIEADVRSRVDkqgFLIFKGKTYRVVWFTERKDVAYDKQTLFTVNCV 280  Erinaceus hed...
ASL68940      200 DVIPIDQYMCGKDGKPIPDYAALAANENIISLADVVADVSARADaqgYINFKNKLYQIVWHAERKNVPYAKQSVFTINSV 279  Hypsugo bat c...
P0C6W4        196 DFTPIDQYMCGKNGKPIAEFAALMASEGITKLADVEAEVKSRTDsdrYIVFKNKLYRIVWNVQRKDVAYSKQSAFTMNSI 275  Pipistrellus ...
P0C6W3        196 DCIPIDQYMCGKNGKPIADYAKIVAKEGLTTLADIEVDVKSRMDsdrFIVLNKKLYRVVWNVTRRNVPYPKQTAFTIVSV 275  Tylonycteris ...
AHY61336      196 DFIPIDQFMCGKDGAPVPDYATLAASENLISLADVATDVSARADsdgYIDFKSKLYRIVWHVERKNVPYAKQTIFTINSV 275  BtVs-BetaCoV/...
Feature 1                                                                         #  #            
AUM60023      276 IQKQDIDDVPAHSFTLGGkVDLLVPRNKWNGKSSlsLKDKILYTFYGKESFEQHSYIYHSAFADCTSCSNGRWLTGNAVq 355  Middle East r...
YP_009047202  274 VQKDGVENTPPHYFTLGCkILTLTPRNKWSGVSDlsLKQKLLYTFYGKESLENPTYIYHSAFIECGSCGNDSWLTGNAIq 353  Middle East r...
K9N7C7        274 VQKDGVENTPPHYFTLGCkILTLTPRNKWSGVSDlsLKQKLLYTFYGKESLENPTYIYHSAFIECGSCGNDSWLTGNAIq 353  Betacoronavir...
AVV62524      277 VQCDGIERVPPHSFTLGGkVDVLVPSNKWTGKKTltLKERILYTFYGKDAFENHSYIYHSAFVECTGCGNGRWLTGNAVq 356  Middle East r...
QCC20711      281 MQRNGVQDVPAHPFTLGArVEQLKPHVAKGNLVGltLKAKILYTMYGEDAVEEPSYIYHSAFVDCSSCNEGKWCTGNAVa 360  Hedgehog coro...
QGA70701      281 MQRNGLECVPAHPFTLGGrVNVLKPRVVKGNLVDltLKSKILFTMYGEGAIDDPSYIYHSAFVDCSECGEGVWCTGNAVs 360  Erinaceus hed...
ASL68940      280 VQKNGIDDVPPHSFTLGGkVEVLAPRNKWPGKNTdpLKDRLLYTFYGKGALEKHSYIYHSAFADCTGCGKGSWLTGNAVq 359  Hypsugo bat c...
P0C6W4        276 VQLDTMEDVPRHSFTIGSeIQVIAPSTAVQANGHlnLKQRLLYAFYGKQAVSEPNYIYHSAYVDCTSCGKGSWLTGNAVq 355  Pipistrellus ...
P0C6W3        276 VQCDDKDSVPEHTFTIGSqILMVSPLKATNNKNFn-LKQRLLYTFYGKDAVQQPGYIYHSAYVDCNACGRGTWCTGNAIq 354  Tylonycteris ...
AHY61336      276 VQCDGIQDVPPHTFTLGGkVDLIVPRNKWTGKTAlnLKQKILYTFYGKDALDNHSYIYHSAYADCTSCGKGSWLTGNAVq 355  BtVs-BetaCoV/...
Feature 1            # #                                                                          
AUM60023      356 GFACECGAVYtANDVDLQSSGLLKPSALFCATCPFAKGdsCSSSckhtmaqvisylseRCVVKPDGKSFILIFGGVVYAY 435  Middle East r...
YP_009047202  354 GFACGCGASYtANDVEVQSSGMIKPNALLCATCPFAKGdsCSSNckhsvaqlvsylseRCNVIADSKSFTLIFGGVAYAY 433  Middle East r...
K9N7C7        354 GFACGCGASYtANDVEVQSSGMIKPNALLCATCPFAKGdsCSSNckhsvaqlvsylseRCNVIADSKSFTLIFGGVAYAY 433  Betacoronavir...
AVV62524      357 GFACDCGACFsANDVEIQSSGVVKPNAIFCATCPFAKSdgCSCSckhttaqvvsylseKCMIAPESKSFTMTFGGVVYAY 436  Middle East r...
QCC20711      361 GFACECGASYtAKEVLLQSSGLVKPNALFCATCPFAQGdrCSLDckhttpqvvsylseKCVVFPSGKSFVLAFGGSLFTY 440  Hedgehog coro...
QGA70701      361 GFACECGAQYkSTEVLLQSSGLVKPNAIFCATCPFAEGdsCTSEckhtiaqvisnlsdKCVVFPQGKSFVLIYGGVVYAY 440  Erinaceus hed...
ASL68940      360 GFACDCGAEFsALDVELQSSGVINPNALFCATCPFAKGdsCSSAckhtlpqlvsklteKCELTPDGKSFTITFGGVVYAY 439  Hypsugo bat c...
P0C6W4        356 GFACDCGAHYcANDVDLQSSGLVRKNAVLLTTCPCNKDgeCKHTlpqlv----smmtdKCDVEVVGKTFILTYGGVIYAY 431  Pipistrellus ...
P0C6W3        355 GFACDCGANYsANDVDLQSSGLVPRNALFLANCPCANNgaCSHSaaqvy----nildgKACVEVGGKSFTLTFGGVVYAY 430  Tylonycteris ...
AHY61336      356 GFACDCGAQYsANDVELQSSGVVNPNAIFCATCPFAKGdsCSSSckhtlaqmvsqlseKCDVAPDGKSFTLAFGGVVYAY 435  BtVs-BetaCoV/...
Feature 1                                                                                         
AUM60023      436 LGCaeGTMYFVPRAKSIVSTIGEAIFTGCVGSWNKVSKVANLFLTQAQRSLNFVGEFVLNDIVVAILSGTTSNVEKLRSL 515  Middle East r...
YP_009047202  434 FGCeeGTMYFVPRAKSVVSRIGDSIFTGCTGSWNKVTQIANMFLEQTQHSLNFVGEFVVNDVVLAILSGTTTNVDKIRQL 513  Middle East r...
K9N7C7        434 FGCeeGTMYFVPRAKSVVSRIGDSIFTGCTGSWNKVTQIANMFLEQTQHSLNFVGEFVVNDVVLAILSGTTTNVDKIRQL 513  Betacoronavir...
AVV62524      437 LGCheGTMYFVPRAKSIVSRVGDSIFTGCVGAWDKVSKIANLFVEQSQRSLNFVGEFVLNDIVIAILSGTTTNVDKLRSL 516  Middle East r...
QCC20711      441 MGCsqGTMYFVPRAKSVVSKIGTACFTGCVGAWDKVQQVANLFTQKAQQQLNFVNEFVVSDVVLAILTGTTSRMDELRGL 520  Hedgehog coro...
QGA70701      441 MGCaqGTMYFVPRATSVVSRIGDSCFTGCVGVWSKVQQIANLFTEKAQQHLNFVNNFVVSDVVVALLTGTTSSVEKLHDL 520  Erinaceus hed...
ASL68940      440 LGCteGTMYFIPRAKSIVSRIGDAIFTGCVGTWSKVTSIANLFLEQTQRSLNFVGEFVLNDVVIAILSGTTNNVDKLRSL 519  Hypsugo bat c...
P0C6W4        432 MGCsgGTMHFIPRAKSCVSKIGDAIFTGCTGTWSKVCETANLFLERAQHAINFVNEFVLTETVVALLSGTTSSIEELRDL 511  Pipistrellus ...
P0C6W3        431 MGCcdGTMYFVPRAKSCVSRIGDAIFTGCTGTWDKVVETANLFLEKAQRSLNFCQQFALTEVVLAILSGTTSTFEELRDL 510  Tylonycteris ...
AHY61336      436 LGCleGTMYFIPRAKSIVSKVGDAIFTGCVGTWSKVATIASLFLEQTQRSLNFVGEFVLNDVVLAILSGTTTNVDKLRNL 515  BtVs-BetaCoV/...
Feature 1                                                                                         
AUM60023      516 IqdiSFERLRDYLAVYDIEVTKGPFVEGAINVGKNGLqFAAITAPFLVLNGLAESFKKVAAVPYKVCSTLRDTleyyaQS 595  Middle East r...
YP_009047202  514 LkgvTLDKLRDYLADYDVAVTAGPFMDNAINVGGTGLqYAAITAPYVVLTGLGESFKKVATIPYKVCNSVKDTlayyaHS 593  Middle East r...
K9N7C7        514 LkgvTLDKLRDYLADYDVAVTAGPFMDNAINVGGTGLqYAAITAPYVVLTGLGESFKKVATIPYKVCNSVKDTltyyaHS 593  Betacoronavir...
AVV62524      517 VtnmDIEKLRQYLVAYDIAVTAGPYVEGAINVGKQGLeFAAITAPFLVLTGLGESFKKVAAIPYKACKSIKDTlayysQS 596  Middle East r...
QCC20711      521 LkdiTFEKLRDYCDKHGIKVTMGDYVDSAINVGGSNLkSAAINAPFVVLPKLGESFKKIAAVPFKLSNSFLQTweylsDC 600  Hedgehog coro...
QGA70701      521 LenvTFEKVRNHFAAHGIKVTMGNYVESAINVGLSSLtTAAINAPFMVLSNLGETFKKCAAVPFKKCGSFMQMckhlsDS 600  Erinaceus hed...
ASL68940      520 VsnlDADKLRNYLSDFGIAVTVGPYLDGAINVGKQGLqFATITAPFLILTGLGESFKKAAAVPYKLCSSLKDTldyyaNS 599  Hypsugo bat c...
P0C6W4        512 CrnaTFEKVRDYLTPRGWIVTMGSYIEGVINVGAAGVcNAALNAPFIVLSGLGESFKKVAATPWKLCSSLRETldhyaDS 591  Pipistrellus ...
P0C6W3        511 ChnaSYEKVRDHLVNHGFVVTIGDYIRDAINIGANGVcNATINAPFIAFTGLGESFKKVSAIPWKICSNLKSAldyysSN 590  Tylonycteris ...
AHY61336      516 VkhlDVDKLREYLADYDIAVTVGPYLDGAINVGKQGLqFAAITAPFVVLTGLGESFKKVAAIPYKACKSIKETllyyaES 595  BtVs-BetaCoV/...
Feature 1                                                                                         
AUM60023      596 ILYRVFPYDmsSDVSSFSELLLECVGFTTASVYFVARLLDEKVESLLSTIFSNCQkAVSAFITTCFDATtaTINYVIDLA 675  Middle East r...
YP_009047202  594 VLYRVFPYDmdSGVSSFSELLFDCVDLSVASTYFLVRILQDKTGDFMSTIITSCQtAVSKLLDTCFEATeaTFNFLLDLA 673  Middle East r...
K9N7C7        594 VLYRVFPYDmdSGVSSFSELLFDCVDLSVASTYFLVRLLQDKTGDFMSTIITSCQtAVSKLLDTCFEATeaTFNFLLDLA 673  Betacoronavir...
AVV62524      597 ILYRVYPYEisDDVSAFSELLLDCVGFTAASCYFVVRLLEDKVEALMSTIFNSCQnAVSSFINVCFEATaaTLSFIFDLA 676  Middle East r...
QCC20711      601 IVYRVLPYEl-EDVSDFVQLLFNCVEISAASMYFASVVIREKVNTMFNALPVSVQtAAKSFIDVCLRATlcTVKFLNDLL 679  Hedgehog coro...
QGA70701      601 VVFRVLPYDl-QSSQDFFDLLLNCVQLSAASLYFASQSVTTRAFVMLDALPVSVKnVARTFIETCLCAAnfTLKVLCELV 679  Erinaceus hed...
ASL68940      600 ILYRVFPYEisSDVSSFSELLLDCIGFTAASAYFVVRLLHDKTDTLLSTIYSSCQaAVKSFLNTCFETTaaSINFLIDLA 679  Hypsugo bat c...
P0C6W4        592 ITYRVFPYDipCDVTDYTALLLDCAVLTGASAYFVARYVDEKVEQLTNLVFSSCQsAVAAFVQACMSTYkaTAKFISDMF 671  Pipistrellus ...
P0C6W3        591 IMFRVFPYDipCDVSNFVELLLDCGKLTVATSYFVLRYLDEKFDTVLGTVSSACQtALSSFLNACVAASraTAGFINDMF 670  Tylonycteris ...
AHY61336      596 ILYRVFPYEisSDVSTFSELLLDCVGFTAASCYFVVRLLDEKAEALLSTVFSSCQaAVSKFLNGCFEATtaTVNFLLDLA 675  BtVs-BetaCoV/...
Feature 1                                                                                         
AUM60023      676 NLFHIFLKKAYVYTSMGFVAIGGRVSNLTKQLLEVLSKAMQLLHTKISWAGAKIRAVIYNSRDALVFSTGSYYCVNSKAN 755  Middle East r...
YP_009047202  674 GLFRIFLRNAYVYTSQGFVVVNGKVSTLVKQVLDLLNKGMQLLHTKVSWAGSKIIAVIYSGRESLIFPSGTYYCVTTKAK 753  Middle East r...
K9N7C7        674 GLFRIFLRNAYVYTSQGFVVVNGKVSTLVKQVLDLLNKGMQLLHTKVSWAGSNISAVIYSGRESLIFPSGTYYCVTTKAK 753  Betacoronavir...
AVV62524      677 QLFKVFLRQTYVYTTTGFVVVGGKASQLTKQLLDILSKAMQLLHTKVSWAGAKVRAVIYDSKESLVFPTGTYHCVSTQAN 756  Middle East r...
QCC20711      680 SLVKLVVYKAFVYTSAGFVSMLEKTSPAAQKLLDVLSKAFKLLHKKVSWAGSKVQAVIYEGKDALVFSSGTYHCVTAPGS 759  Hedgehog coro...
QGA70701      680 NLVKVIFSKAYVYTRAGFVATMEYVSPLTQRLLDALSKAMRLLHKKVSWAGSKVHAVIFEGKDALVFPSGTYHCVTAPGS 759  Erinaceus hed...
ASL68940      680 NLFKTFLTQAYVYTTRGFVIVGGKATKLTTQLLDILSKGMQLLSTKVTWAGAKVKAVVYNSRESLVFPSGTYYCVPTKAS 759  Hypsugo bat c...
P0C6W4        672 TLIKVVSERLYVYTSVGFVVVGDYSSQLLKQFMHILSKAMQLLHTTVSWAGSKLPSVVYNGRDSLVFPSGTYYCVSTQGR 751  Pipistrellus ...
P0C6W3        671 KLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYFCLSTKAK 750  Tylonycteris ...
AHY61336      676 NLFKIFLTQAYVYTTTGFVAVGCKVSNLTKQLLEILSKAMQLLHTKVSWAGAKVKAVVYNSRESLVFPSGTYYCVAARAN 755  BtVs-BetaCoV/...
Feature 1                                                                                         
AUM60023      756 AIQQQFNVALPGELSKKQLGLLEPqtHATTVDVSVLNDTVEVVMGQLEETNMHSPDLIVGDYVIISDKLFVRSVEDgdtv 835  Middle East r...
YP_009047202  754 SVQQDLDVILPGEFSKKQLGLLQPtdNSTTVSVTVSSNMVETVVGQLEQTNMHSPDVIVGDYVIISEKLFVRSKEEdgfa 833  Middle East r...
K9N7C7        754 SVQQDLDVILPGEFSKKQLGLLQPtdNSTTVSVTVSSNMVETVVGQLEQTNMHSPDVIVGDYVIISEKLFVRSKEEdgfa 833  Betacoronavir...
AVV62524      757 AVQQEFSVVLPGEVAKKQIGLLEPvnHSATVDVQIQNNTVDVVVGQLEETNMHSPDLVVGDYVIISGKLFVRCDEDgqtt 836  Middle East r...
QCC20711      760 VVGAHLDATIPGEVVKKQLSMLTAtnYSTTVDVRPKTRNVELVYGQLETTNMHSPDVVAGDYVIISDKVFVRSEEDgria 839  Hedgehog coro...
QGA70701      760 VVGAHLDATIPGDFTKKQLSMLSVigHSSTVDVRPKTRTLEVVYGQLEETNTHSPPIVVGDFVVVSDKVFVRSEEEgqpv 839  Erinaceus hed...
ASL68940      760 IVQQEFSMVLPGELVKKQLGLLEPtnHSTTVDAKVQNKSVEVVVGQLEETNMHSPDLVVGDYVVISDKLFVRCVEDgqtv 839  Hypsugo bat c...
P0C6W4        752 SLQDQFDLVIPGDLSKKQIGILEPtpNSTTVDKKINTNVVEVVVGQLEPTKEHSPELVVGDYVIISNKIFVRSVEDsetv 831  Pipistrellus ...
P0C6W3        751 TLQGQMNLVLPGDYNKKTLGILDPvpNADTIDVNANSTVVDVVHGQLEPTNEHGPSMIVGNYVLVSDKLFVRTEDEe--- 827  Tylonycteris ...
AHY61336      756 AVQQEFSAVLPGELAKKQLGLLEPvrHATTVDVQVQNKVVDVVVGQLEETNMHSPDLIVGDYVVISDKLFVRCEEDgqtv 835  BtVs-BetaCoV/...
Feature 1                             
AUM60023      836 YYPMCTNGQAVPTLFRLKGG 855  Middle East respiratory syndrome-related coronavirus
YP_009047202  834 FYPACTNGHAVPTLFRLKGG 853  Middle East respiratory syndrome-related coronavirus
K9N7C7        834 FYPACTNGHAVPTLFRLKGG 853  Betacoronavirus England 1
AVV62524      837 FYPMCTNGKVVPTLFKLKGG 856  Middle East respiratory syndrome-related coronavirus
QCC20711      840 FYPMCTNGKAVPCMFTLKGG 859  Hedgehog coronavirus 1
QGA70701      840 FYPMCTNGRAVPTLFKLKGG 859  Erinaceus hedgehog coronavirus HKU31
ASL68940      840 FYPMCTNGNVVPTLFRLKGG 859  Hypsugo bat coronavirus HKU25
P0C6W4        832 FYPLCTDGKIVPTLFRLKGG 851  Pipistrellus bat coronavirus HKU5
P0C6W3        828 FYPLCTNGKVVSTLFRLKGG 847  Tylonycteris bat coronavirus HKU4
AHY61336      836 FYPMCTNGQAVPTLFRLKGG 855  BtVs-BetaCoV/SC2013

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