7MSW,7MSX


Conserved Protein Domain Family
betaCoV_Nsp2_SARS-like

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cd21516: betaCoV_Nsp2_SARS-like 
Click on image for an interactive view with Cn3D
betacoronavirus non-structural protein 2 (Nsp2) similar to SARS-CoV Nsp2, and related proteins from betacoronaviruses in the B lineage
Non-structural proteins (Nsps) from Severe acute respiratory syndrome coronavirus (SARS-CoV) and betacoronaviruses in the sarbecovirus subgenus (B lineage) are encoded in ORF1a and ORF1b. Post infection, the SARS-CoV genomic RNA is released into the cytoplasm of the cell and translated into two long polyproteins (pp), pp1a and pp1ab, which are then autoproteolytically cleaved by two viral proteases Nsp3 and Nsp5 into smaller subunits. Nsp2 is one of these subunits. The function of Nsp2 remains unknown. Deletion of Nsp2 from the SARS-CoV genome results in only a modest reduction in viral titers. Rather than playing a role in viral replication, SARS-CoV Nsp2 may be involved in altering the host cell environment; it has been shown to interact with two host proteins, prohibitin 1 (PHB1) and PHB2 which have been implicated in cellular functions, including cell-cycle progression, cell migration, cellular differentiation, apoptosis, and mitochondrial biogenesis.
Statistics
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PSSM-Id: 439199
Aligned: 10 rows
Threshold Bit Score: 952.292
Created: 8-Apr-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:C C H HClick to see conserved feature residue pattern help
Evidence:
  • Structure:7MSW: SARS-CoV-2 Nsp2 binds zinc ion

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           #                               #  # #                        
7MSW_A          2 YTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLseqld-fidtKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLA 80   Severe acute ...
7MSX_A          2 YTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLseqld-fidtKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLA 80   Severe acute ...
P0C6X7        182 VTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLseqld-yiesKRGVYCCRDHEHEIAWFTERSDKSYEHQTPFEIKSA 260  Severe acute ...
P0C6F5        182 FTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLseqld-yiesKRGVYCCREHEHEIVWFTERSEKSYERQTPFEIKSA 260  Bat CoV 279/2005
YP_003858583  182 YTRYVDNNFCGPDGYPLECIKDLLARAGKSSAPLaeqld-flesKRGVYCCREHEHEIAWYTERSDKSYELQTPFDITNA 260  Bat coronavir...
ADY69162      173 SVDHVDSNYCDGNGNPLPCIVSLLEKAGYSDKPLsdamaylaglNKHGQPCRDHEHKIVWNVERTDAPYRQQSVSTIIKL 252  Zaria bat cor...
YP_009072438  177 FHRYVDNYYCTGDGKPLPCIVTLLEKAGHANKPLddamdylrglNRMGQPCRDHDHERVWEVERDNAPYPEQSLFSISAI 256  Bat Hp-betaco...
APO40578      182 YTRYVDNNFCGPDGYPLDCIKDLLARAGKSCAPLsdqid-flqsKRGVYCCREHEHEIAWFTDRSEKSYEQQTPFDITSA 260  Severe acute ...
QHD43415      182 YTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLseqld-fidtKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLA 260  Severe acute ...
YP_009742609    2 YTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLseqld-fidtKRGVYCCREHEHEIAWYTERSEKSYELQTPFEIKLA 80   Severe acute ...
Feature 1                                                                                         
7MSW_A         81 KKFdtfnGECPNFVFPLNSiIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKAT 160  Severe acute ...
7MSX_A         81 KKFdtfnGECPNFVFPLNSiIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKAT 160  Severe acute ...
P0C6X7        261 KKFdtfkGECPKFVFPLNSkVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKAT 340  Severe acute ...
P0C6F5        261 KKFdtfkGECPKFVFPLNSkVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKAT 340  Bat CoV 279/2005
YP_003858583  261 KKFdsfkGECPKFVFPLNStVKVLQPRVEKKKTEGFLGRIRTVYQVASPGECNSMHLSTYMNCNHCGEKSWQTCDFLTAT 340  Bat coronavir...
ADY69162      253 QAC----DTVNHNILASDCtVHVLKPRKVKNTGEPVLNKFKKLYNVSSLGELQPMALSALCNCATCDMTVWCTSNFNEAN 328  Zaria bat cor...
YP_009072438  257 KTL----GEIPHCVFAPDCaVKVMKPRKVKRGADGFMTKLRRVYNINGFDEVKPMALCALHYCEDCGMEMWCHSNFEEAY 332  Bat Hp-betaco...
APO40578      261 GKFdsfkGECPKFVFPLNSkIRVLQPRVEKRKTEGFMGRIRTVYQVASPSECNSMHLSTYMNCNHCGESSWQTGDFLKAT 340  Severe acute ...
QHD43415      261 KKFdtfnGECPNFVFPLNSiIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKAT 340  Severe acute ...
YP_009742609   81 KKFdtfnGECPNFVFPLNSiIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKAT 160  Severe acute ...
Feature 1                                                                                         
7MSW_A        161 CeFCGTEN-LTKEGATTCGYLPQNAVVKIYCPACHNsevgPEHSLAEYHNesglk----tilrKGGRTIAFGGCVFSYVG 235  Severe acute ...
7MSX_A        161 CeFCGTEN-LTKEGATTCGYLPQNAVVKIYCPACHNsevgPEHSLAEYHNesglk----tilrKGGRTIAFGGCVFSYVG 235  Severe acute ...
P0C6X7        341 CeHCGTEN-LVIEGPTTCGYLPTNAVVKMPCPACQDpeigPEHSVADYHNhsnie----trlrKGGRTRCFGGCVFAYVG 415  Severe acute ...
P0C6F5        341 CeQCGTEN-LVCEGPTTCGYLPANAVVKMPCPACQDpevgPEHSVADYHNhsnie----trlrKGGRTKCFGGCVFAYVG 415  Bat CoV 279/2005
YP_003858583  341 CeMCGNQN-TVEEGPTTCGYVPSNAVVKMVCPACQNpeigPDHSVADYHNnskie----trlrKGGRIKSFGGCVFSYVG 415  Bat coronavir...
ADY69162      329 C-SCGSAFkVDKDTPQSAGYVVGAPVATMPCELCKTd---PEHTLGDFLAqnl-------dyiDENGEVCFGGCVFAYVQ 397  Zaria bat cor...
YP_009072438  333 C-PCGKIYtNTPCTLTSAGYVVEGSVVAMPCDACKSd---SDHSNGTFYDsckylaedkaepgNRENFVYFGGCCFAYVG 408  Bat Hp-betaco...
APO40578      341 CeLCGTQN-AVVEAPTTCGYLPNNAVVKMACPACQNpkigPDHSVADYHNhsgii----sqlrKGGRVLPFGGCVFSYVG 415  Severe acute ...
QHD43415      341 CeFCGTEN-LTKEGATTCGYLPQNAVVKIYCPACHNsevgPEHSLAEYHNesglk----tilrKGGRTIAFGGCVFSYVG 415  Severe acute ...
YP_009742609  161 CeFCGTEN-LTKEGATTCGYLPQNAVVKIYCPACHNsevgPEHSLAEYHNesglk----tilrKGGRTIAFGGCVFSYVG 235  Severe acute ...
Feature 1                                                                                         
7MSW_A        236 CHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLD 315  Severe acute ...
7MSX_A        236 CHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLD 315  Severe acute ...
P0C6X7        416 CYNKRAYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASFSASTSAFIDTIKSLD 495  Severe acute ...
P0C6F5        416 CYNKRAYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASFSASTCAFVDTVKGLD 495  Bat CoV 279/2005
YP_003858583  416 CYNKRAFWVPRAAANIGSNHTGVVGEGVETMNEDLLQILSRERVVINIVGEFCLNEEIAILLASLSASTSAFVETVKNLD 495  Bat coronavir...
ADY69162      398 CMSGKSYWVPRVWSNIGHNHSGVTGLDTNTMNEDLKSILDHEKIHVNFVDSFKLTEAAITLLASATASVESLIQNVKDLT 477  Zaria bat cor...
YP_009072438  409 CRNGNAIWVPRAHSDIGNNHSGIVGADVALLNDDLKAIVAQEVIPVVIPEDFKVNETVVALVAAVSGSVDQFIKNCKGLT 488  Bat Hp-betaco...
APO40578      416 CYNKCAYWVPRAAANIGSNHTGVVGENTETMNDDLLQILNRQCVNINIVGDFCLNEEVVIILASMSASTSAFIETVKNLD 495  Severe acute ...
QHD43415      416 CHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLD 495  Severe acute ...
YP_009742609  236 CHNKCAYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASFSASTSAFVETVKGLD 315  Severe acute ...
Feature 1                                                                                         
7MSW_A        316 YKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI--LSPLYAFASEAARVVRSIFSRTLETAQNSVrvlqkaaitilDGI 393  Severe acute ...
7MSX_A        316 YKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI--LSPLYAFASEAARVVRSIFSRTLETAQNSVrvlqkaaitilDGI 393  Severe acute ...
P0C6X7        496 YKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSV--LTPLCGFPSQAAGVIRSIFARTLDAANHSIpdlqraavtilDGI 573  Severe acute ...
P0C6F5        496 YKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSI--LTPLYGFPSQAAGVIRSIFTRALDTANHSIpdlqraaitilDGI 573  Bat CoV 279/2005
YP_003858583  496 FKTFKKIIESCGNYKVTKGKFKPGVWNIGTSKSL--LTPLHCFSSQAAGVVRSIFSRTLATANHSIvdlhraamiifSDI 573  Bat coronavir...
ADY69162      478 FDKYKILLESTGRFQVTMGKYVQGALNFSKEDLVtfCDPILAAPGHALSLCRAIFNKTVDLSGTTLanlketmsavyKDL 557  Zaria bat cor...
YP_009072438  489 AETFKCLLEASGKFRVTVDHVIDGCICVATDSAVtaLEPALAFCTAANIMYRTLVATSVVISAHTLdalaqrvrdacKHV 568  Bat Hp-betaco...
APO40578      496 YSVFKTIVESCGSYKVTKGKHRAGAWNIGSNKTL--LTPLCGFSSQAACVVRSIFSRTVDTAGQSIqalqtaamtifSDI 573  Severe acute ...
QHD43415      496 YKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI--LSPLYAFASEAARVVRSIFSRTLETAQNSVrvlqkaaitilDGI 573  Severe acute ...
YP_009742609  316 YKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSI--LSPLYAFASEAARVVRSIFSRTLETAQNSVrvlqkaaitilDGI 393  Severe acute ...
Feature 1                                                                                         
7MSW_A        394 SQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSqwltnifgtvyEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFIS 473  Severe acute ...
7MSX_A        394 SQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSqwltnifgtvyEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFIS 473  Severe acute ...
P0C6X7        574 SEQSLRLVDAMVYTSDLLTNSVIIMAYVTGGLVQQTSqwlsnllgttvEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLI 653  Severe acute ...
P0C6F5        574 SEQSLRLIDAMVYTSDLLTNSVIVMAYVTGGLVQQITqwlsnmlgttvDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLV 653  Bat CoV 279/2005
YP_003858583  574 SDQANRVLDAMVNTSDLVTESVVVMAYLTGGLVQQVStwlsqllntsvDKFSAVLRWLEQKLQGGIDFLRQAWGILKLLV 653  Bat coronavir...
ADY69162      558 HPRALKLVCTLCDNVTLMRNSVLLLMQDAQNLPVVIGdmldclfqgcaDFVNKVLSKLMEFAVNSFDALCDFATLTNLLV 637  Zaria bat cor...
YP_009072438  569 HPQAMRLLNTLNEYVDYSTNSTLVLCHDVINLPIVLGdildrlfcgckKIVESVTTWLYNFSISTIDTIFDLKAFISLIV 648  Bat Hp-betaco...
APO40578      574 SDLSNRLLDAMINTAGLVTDSVIVMAYVTGGLVQQVEkwlhqllgstaDNLKNVLVWLESQLQKGVSFLKEAWHILQFLV 653  Severe acute ...
QHD43415      574 SQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSqwltnifgtvyEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFIS 653  Severe acute ...
YP_009742609  394 SQYSLRLIDAMMFTSDLATNNLVVMAYITGGVVQLTSqwltnifgtvyEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFIS 473  Severe acute ...
Feature 1                                                                                         
7MSW_A        474 TCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGaklkalnlgetfvths-kglyrkcvksreetgLLMP 552  Severe acute ...
7MSX_A        474 TCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGaklkalnlgetfvths-kglyrkcvksreetgLLMP 552  Severe acute ...
P0C6X7        654 TGVFDIVKGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGaklrslnlgevfiaqs-kglyrqcirgkeqlqLLMP 732  Severe acute ...
P0C6F5        654 TGVFDIVKGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGaklrtlnlgevfiaqs-kglyrqcirgkeqlqLLMP 732  Bat CoV 279/2005
YP_003858583  654 TGAYVVIRGKIQVVNTSLIECVTSFVDVVNKVFELCTDYITVAGarvrainfgevliaqs-rglyrqcvrardqlqLLMP 732  Bat coronavir...
ADY69162      638 RKKYKVVKGKVVLAVKNITGLVGQVMAVLNATLSAIYQELQFAGakvggfqltqsfynmantictpvvvgaqtiqeLFLP 717  Zaria bat cor...
YP_009072438  649 RNKYKFVKGKFVLLAKNVSSVVQSVVAYLNNVISAFYQQVQFAGtyvgafeihqtllelggaiytrvqvaansiqdLVLP 728  Bat Hp-betaco...
APO40578      654 TGAYTIVKGQIQVVNEGLLHFVRSFISIVNKALELCTDYILLAGarvrtinlgevliaqs-rgfyrkcvrakeqlqLLMP 732  Severe acute ...
QHD43415      654 TCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGaklkalnlgetfvths-kglyrkcvksreetgLLMP 732  Severe acute ...
YP_009742609  474 TCACEIVGGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGaklkalnlgetfvths-kglyrkcvksreetgLLMP 552  Severe acute ...
Feature 1                                                                                         
7MSW_A        553 LKAPK-EIIFLEGETLPTEVLTEEVVLKTGDLQPLEqPTSEAVEAPLVGTPVCINGLMLLEIKDteKYCALAPNMMVTNN 631  Severe acute ...
7MSX_A        553 LKAPK-EIIFLEGETLPTEVLTEEVVLKTGDLQPLEqPTSEAVEAPLVGTPVCINGLMLLEIKDteKYCALAPNMMVTNN 631  Severe acute ...
P0C6X7        733 LKAPK-EVTFLEGDSHDTVLTSEEVVLKNGELEALEtPVDSFTNGAIVGTPVCVNGLMLLEIKDkeQYCALSPGLLATNN 811  Severe acute ...
P0C6F5        733 LRAPK-EVTFFEGDSHDTVFTSEEVVLKNGELEALEtPVDSFTNGAVIGTPVCVNGLMLLELKDkeQYCALSPGLLATNN 811  Bat CoV 279/2005
YP_003858583  733 LKSPK-DVVFLDGDAYDTLLTSEEVTVKNGTLEALDlELSDVVTGVAEGVPVCVNGLMLLELKEkeQYCALSPSLLATNN 811  Bat coronavir...
ADY69162      718 GSLSKqELTFTEGPTVETSVTTLDVVELQGTLEHLDiPIQAVHQGPVEGDIVVVNKTVFVRYGD--CFSPASTDCQAVNT 795  Zaria bat cor...
YP_009072438  729 STVSKkELTFVDGHAIDTELTSEEVTVLEGIVEQLDtDTNKIAGDSIKGDLVTVNNCVFVRFGDg-NLSPATTDCQATKG 807  Bat Hp-betaco...
APO40578      733 LKAPK-EIIFLEGDTCDTLLTSEEVVIKTGTLEATDfVLSDIVNGVAEGTPVCVNGLMLLELKErdQYCALTPALLATNN 811  Severe acute ...
QHD43415      733 LKAPK-EIIFLEGETLPTEVLTEEVVLKTGDLQPLEqPTSEAVEAPLVGTPVCINGLMLLEIKDteKYCALAPNMMVTNN 811  Severe acute ...
YP_009742609  553 LKAPK-EIIFLEGETLPTEVLTEEVVLKTGDLQPLEqPTSEAVEAPLVGTPVCINGLMLLEIKDteKYCALAPNMMVTNN 631  Severe acute ...
Feature 1                
7MSW_A        632 TFTLKGG 638  Severe acute respiratory syndrome coronavirus 2
7MSX_A        632 TFTLKGG 638  Severe acute respiratory syndrome coronavirus 2
P0C6X7        812 VFRLKGG 818  Severe acute respiratory syndrome-related coronavirus
P0C6F5        812 VFSLKGG 818  Bat CoV 279/2005
YP_003858583  812 VFTLKGG 818  Bat coronavirus BM48-31/BGR/2008
ADY69162      796 VFKLKGG 802  Zaria bat coronavirus
YP_009072438  808 VFKLKGG 814  Bat Hp-betacoronavirus/Zhejiang2013
APO40578      812 VFTLKGG 818  Severe acute respiratory syndrome-related coronavirus
QHD43415      812 TFTLKGG 818  Severe acute respiratory syndrome coronavirus 2
YP_009742609  632 TFTLKGG 638  Severe acute respiratory syndrome coronavirus 2

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