7MSW,7MSX


Conserved Protein Domain Family
alpha_betaCoV_Nsp2

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cd21511: alpha_betaCoV_Nsp2 
Click on image for an interactive view with Cn3D
alpha- and betacoronavirus non-structural protein 2
Coronavirus Nsps are encoded in ORF1a and ORF1b. Post infection, the genomic RNA is released into the cytoplasm of the cell and translated into two long polyproteins (pp), pp1a and pp1ab, which are then autoproteolytically cleaved by two viral proteases Nsp3 and Nsp5 into smaller subunits. Nsp2 is one of these subunits. This alpha- and betacoronavirus family includes alphacoronavirus human coronavirus 229E (HCoV-229E) Nsp2, betacoronavirus Severe acute respiratory syndrome coronavirus (SARS-CoV) Nsp2, SARS-CoV-2 Nsp2, and Murine hepatitis virus (MHV) Nsp2 (also known as p65). The function of Nsp2 remains unclear. SARS-CoV Nsp2, rather than playing a role in viral replication, may be involved in altering the host cell environment; deletion of Nsp2 from the SARS-CoV genome results in only a modest reduction in viral titers. It has been shown to interact with two host proteins, prohibitin 1 (PHB1) and PHB2, which have been implicated in cellular functions, including cell-cycle progression, cell migration, cellular differentiation, apoptosis, and mitochondrial biogenesis. MHV Nsp2/p65, different from SARS-CoV Nsp2, may play an important role in the viral life cycle. This family may be distantly related to the gammacoronavirus Avian infectious bronchitis virus (IBV) Nsp2; IBV Nsp2 is a weak protein kinase R (PKR) antagonist, which may suggest that it plays a role in interfering with intracellular immunity.
Statistics
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PSSM-Id: 439197
Aligned: 7 rows
Threshold Bit Score: 326.815
Created: 13-Oct-2021
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:7MSX: SARS-CoV-2 Nsp2 binds zinc ion

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
7MSW_A       2 YTRYVDNNFCGPDGYPLECIKdllaragkasctlse-qldfidtkrgvyccrEHEHEIAWYTER-SEKSYELQTpfeikl 79   Severe acute res...
P0C6X1     112 NVTYTDQYLCGADGKPVMSEDlwqfvdhfg--------------eneeiiinGHTYVCAWLTKR-KPLDYKRQNnlaiee 176  Human coronaviru...
P0C6U9     250 SILFLDQYGCDYTGRLAKGLEdygdctleemk----------elfpvwcdslDNEVVVAWHVDRdPRAVMRLQTlatirs 319  Murine hepatitis...
AUM60023   196 NFTPIDQYMCGSDGKPIADYAfiadkeklisltdvatdvqsradqngyitlkEKLYRICWYVER-KDVPYTKQTiftins 274  Middle East resp...
P0C6T6     176 DVYLSDQYGFDNNGILVEPVMkllgviksdftleqllaalgkyrtedgydlpDGYVKVAIKVGR-KAVPVLKQSiftvv- 253  Rousettus bat co...
P0C6X7     182 VTRYVDNNFCGPDGYPLDCIKdflaragksmctlse-qldyieskrgvyccrDHEHEIAWFTER-SDKSYEHQTpfeiks 259  Severe acute res...
7MSX_A       2 YTRYVDNNFCGPDGYPLECIKdllaragkasctlse-qldfidtkrgvyccrEHEHEIAWYTER-SEKSYELQTpfeikl 79   Severe acute res...
Feature 1                                                                                      
7MSW_A      80 ak---------kfdtfngECPNFVFPLNsii--ktiQPRVEKKkldgfmgrirs-----------vypvaspnecNQMCL 137  Severe acute res...
P0C6X1     177 -------------ieyvhGDALHTLRNGsvl---emAKEVKTSskvvlsdaldklykvfgspvmtngsnileaftKPVFI 240  Human coronaviru...
P0C6U9     320 igyvgqptedlvdgdvvvREPAHLLAANaiv---krLPRLVETmlytdssvte------------fcyktklcdcGFITQ 384  Murine hepatitis...
AUM60023   275 v----------iqkqdidDVPAHSFTLGgkv--dllVPRNKWNgksslslkdkil--------ytfygkesfeqhSYIYH 334  Middle East resp...
P0C6T6     254 -------------gvteqLVPGYYYPFStssvvehtKPTRGGPvgktveavm--------------lslygtnnyNPATP 306  Rousettus bat co...
P0C6X7     260 ak---------kfdtfkgECPKFVFPLNskv--kviQPRVEKKktegfmgrirs-----------vypvaspqecNNMHL 317  Severe acute res...
7MSX_A      80 ak---------kfdtfngECPNFVFPLNsii--ktiQPRVEKKkldgfmgrirs-----------vypvaspnecNQMCL 137  Severe acute res...
Feature 1           #    #               #  #                                                  
7MSW_A     138 STLMKCd--hCGETSWQTGDFV-KATCefCGTenlt---kegaTTCGYLPQNAVVKIYCPachnsevgpehsla----ey 207  Severe acute res...
P0C6X1     241 SALVQCt---CGTKSWSVGDWT-GFKSs-CCNvisn---klcvVPGNVKPGDAVITTQQA-------------------- 292  Human coronaviru...
P0C6U9     385 FGYVDCcgdaCDFRGWVPGNMMdGFLCpgCSKsympw--eleaQSSGVIPKGGVLFTQSTdtvnre-------------- 448  Murine hepatitis...
AUM60023   335 SAFADCt--sCSNGRWLTGNAVqGFACe-CGAvytan--dvdlQSSGLLKPSALFCATCPfakgdscsssckhtmaqvis 409  Middle East resp...
P0C6T6     307 VARLKCs--yCDYYGWTPLKDIgTVNCl-CGAefqltsscvdaESAGVIKPGCVMLLDKSpgmr---------------- 367  Rousettus bat co...
P0C6X7     318 STLMKCn--hCDEVSWQTCDFL-KATCehCGTenlv---iegpTTCGYLPTNAVVKMPCPacqdpeigpehsva----dy 387  Severe acute res...
7MSX_A     138 STLMKCd--hCGETSWQTGDFV-KATCefCGTenlt---kegaTTCGYLPQNAVVKIYCPachnsevgpehsla----ey 207  Severe acute res...
Feature 1                                                                                      
7MSW_A     208 hnesglktilrkGGRTIAFGGCVFSYVgchnkcaYWVPRASANIgc----nhTGVVGegseglndnlleilqkekvnini 283  Severe acute res...
P0C6X1     293 ------------GAGIKYFCGMTLKFVaniegvsVWRVIALQSVdc----fvASSTFveeehvnrmdtfcfnvrnsvtde 356  Human coronaviru...
P0C6U9     449 -------sfklyGHAVVPFGSAVYWSPyp----gMWLPVIWSSVksyadltyTGVVGckaivqetdaicrslymdyvqhk 517  Murine hepatitis...
AUM60023   410 ylsercvvkpdgKSFILIFGGVVYAYLgcaegtmYFVPRAKSIVstigeaifTGCVGswnkvskvanlfltqaqrslnfv 489  Middle East resp...
P0C6T6     368 --------lipgNRTYVSFGGAIWSPIgkvngvtVWVPRAYSIVag----ehSGAVGsgdtvainkelveyliegirvda 435  Rousettus bat co...
P0C6X7     388 hnhsnietrlrkGGRTRCFGGCVFAYVgcynkraYWVPRASADIgs----ghTGITGdnvetlnedlleilsrervnini 463  Severe acute res...
7MSX_A     208 hnesglktilrkGGRTIAFGGCVFSYVgchnkcaYWVPRASANIgc----nhTGVVGegseglndnlleilqkekvnini 283  Severe acute res...
Feature 1                                                                                      
7MSW_A     284 vgdfklneeiaiil----------asfsastsafvetvkgldykafkqivescgnfkvtkgKAKKGAWNIgeqksilspl 353  Severe acute res...
P0C6X1     357 crlamlgaemtsn------------vrrqvasgvidistgwfdvyddifaeskpwfvrkaeDIFGPCWSAlasalkqlkv 424  Human coronaviru...
P0C6U9     518 cgnleqrailglddvyhrqllvnrgdyslllenvdlfvkrraefackfatcgdglvpllldGLVPRSYYLiksgqaftsm 597  Murine hepatitis...
AUM60023   490 gefvlndivvailsgt-------tsnveklrsliqdisferlrdylavydievtkgpfvegAINVGKNGLqfaaita--- 559  Middle East resp...
P0C6T6     436 dtldnptcatfia------------nldcdtkapvvhtveslqglclankimlgdkplptdEFHPFIVGLayhvqr---- 499  Rousettus bat co...
P0C6X7     464 vgdfhlneevaiil----------asfsastsafidtiksldyksfktivescgnykvtkgKPVKGAWNIgqqrsvltpl 533  Severe acute res...
7MSX_A     284 vgdfklneeiaiil----------asfsastsafvetvkgldykafkqivescgnfkvtkgKAKKGAWNIgeqksilspl 353  Severe acute res...
Feature 1                                                                                      
7MSW_A     354 ya----faseaarvvrsiFSRTLETAqnsvrvlqkaaitild--------gisqyslrlidammfTSDl----------- 410  Severe acute res...
P0C6X1     425 t-------tgelvrfvksICNSAVAVvggtiqilasvpek-----------flnafdvfvtaiqtVFDcav--------- 477  Human coronaviru...
P0C6U9     598 mvnfshevtdmcmdmallFMHDVKVAtkyvkkvt------------------------gklavrfKALgvavvrkitewf 653  Murine hepatitis...
AUM60023   560 ------------pflvlnGLAESFKKvaavpykvcstlrdtleyyaqsilyrvfpydmssdvssfSELll---------- 617  Middle East resp...
P0C6T6     500 ------------acwygaLASRTFEAfrdfvrteeerfaqffgkvcapingcvylayttgrvtlfSAYqvln-------- 559  Rousettus bat co...
P0C6X7     534 cg----fpsqaagvirsiFARTLDAAnhsipdlqraavtild--------giseqslrlvdamvyTSDl----------- 590  Severe acute res...
7MSX_A     354 ya----faseaarvvrsiFSRTLETAqnsvrvlqkaaitild--------gisqyslrlidammfTSDl----------- 410  Severe acute res...
Feature 1                                                                                      
7MSW_A     411 ---aTNNLVVMAYitggvvqltsqwltni-------------fgtvyeklkpvldwlEEKFkegveflrdgwei------ 468  Severe acute res...
P0C6X1     478 --etCTIAGKAFDkvfdyvlldnalvklvttklkgvrerglnkvkyatvvvgsteevKSSRverstavltiann------ 549  Human coronaviru...
P0C6U9     654 dlavDTAASAAGWlcyqlvn-------------------------------glfavaNGGItflsdvpelvknfvdkfkv 702  Murine hepatitis...
AUM60023   618 --ecVGFTTASVYfvarlld-------------------------------ekveslLSTIfsncqkavsafittcfdat 664  Middle East resp...
P0C6T6     560 -taiAKSKDAFGGvaaivvdm----------------------------lkpilewvLKKMsiakgawlpyaegllalf- 609  Rousettus bat co...
P0C6X7     591 ---lTNSVIIMAYvtgglvqqtsqwlsnl-------------lgttveklrpifewiEAKLsagveflkdawei------ 648  Severe acute res...
7MSX_A     411 ---aTNNLVVMAYitggvvqltsqwltni-------------fgtvyeklkpvldwlEEKFkegveflrdgwei------ 468  Severe acute res...
Feature 1                                                                                      
7MSW_A     469 -------------vkfistcaceivgGQIVTCAKEIKESVQTFFKLVNKFLAlcadsiiiggaklkalnlgetfvthskg 535  Severe acute res...
P0C6X1     550 -------------ysklfdegytvviGDVAYFVSDGYFRLMASPNSVLTTAVykplfafnvnvmgtrpekfpttvtcenl 616  Human coronaviru...
P0C6U9     703 ffk--vlidsmsvsvlsgltvvktasNRVCLAGCKVYEVVQKRLSAYVMPVGcneatclvgeiepavveddvvdvvkapl 780  Murine hepatitis...
AUM60023   665 tatinyvidlanlfhiflkkayvytsMGFVAIGGRVSNLTKQLLEVLSKAMQllhtkiswagakiraviynsrdalvfst 744  Middle East resp...
P0C6T6     610 --------kaqftvvkgkfqflraslNSKCHSLCDLLTTIMSKLLTSVKWAGckvdalytgtyyyfsrkgvltevqlcak 681  Rousettus bat co...
P0C6X7     649 -------------lkflitgvfdivkGQIQVASDNIKDCVKCFIDVVNKALEmcidqvtiagaklrslnlgevfiaqskg 715  Severe acute res...
7MSX_A     469 -------------vkfistcaceivgGQIVTCAKEIKESVQTFFKLVNKFLAlcadsiiiggaklkalnlgetfvthskg 535  Severe acute res...
Feature 1                                                                                     
7MSW_A     536 lyrkcvks----------reetgllmplkapkeiiflegetlptevlteevvlKTGDLqpleq-ptseAVEAPLVGTPV 603  Severe acute resp...
P0C6X1     617 esavlfv------------ndkitefqldysidvidneiivkpnislcvplyvRDYVDkwddfcrqysNESWFEDDYRA 683  Human coronavirus...
P0C6U9     781 t-----------------------yqgcckpptsfekicvvdklymakcgdqfYPVVVdnd----tigVLDQCWRFPCA 832  Murine hepatitis ...
AUM60023   745 gsyycvnskanaiqqqfnvalpgelskkqlgllepqthattvdvsvlndtvevVMGQLeetnm-hspdLIVGDYVIISD 822  Middle East respi...
P0C6T6     682 rlgl------------------lltpkqqkmevevldgdfdapvtltdleleeCTGVLeevfgasdvkLVKGTLVSLAS 742  Rousettus bat cor...
P0C6X7     716 lyrqcirg----------keqlqllmplkapkevtflegdshdtvltseevvlKNGELealet-pvdsFTNGAIVGTPV 783  Severe acute resp...
7MSX_A     536 lyrkcvks----------reetgllmplkapkeiiflegetlptevlteevvlKTGDLqpleq-ptseAVEAPLVGTPV 603  Severe acute resp...

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