4Z8V,4Z8Q,4Z8U


Conserved Protein Domain Family
AvrRxo1

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cd21417: AvrRxo1 
AvrRxo1, a type III effector with a polynucleotide kinase domain
This family contains AvrRxo1-ORF1 (also called AvrRxo1) which has been shown to be a type III-secreted virulence factor in Xanthomonas oryzae (Xoc) that causes bacterial leaf streak (BLS) disease in rice plants. AvrRxo1-ORF1 delivery in rice plant cells is recognized by disease resistance protein Rxo1, which triggers resistance to BLS disease. In the Xoc genome, AvrRxo1-ORF1 is adjacent to AvrRxo1-ORF2 (also called AvrRxo1-required chaperone, or Arc1) which appears to act as a molecular chaperone. AvrRxo1 has a T4 polynucleotide kinase (T4pnk) domain, while Arc1 has a kinase-binding domain with a structure that is atypical of effector-binding chaperones. AvrRxo1 and Arc1 comprise a toxin-antitoxin system similar to members of the zeta-epsilon family, with AvrRxo1 acting as the toxin.
Statistics
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PSSM-Id: 411066
Aligned: 12 rows
Threshold Bit Score: 424.495
Created: 13-Dec-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative activeheterodimer
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:
  • Comment:active site residues identified based on comparison with T4pnk kinase domain

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
4Z8V_A          2 TQRKGTDEIYGLGSLPsa---------------------------gPGRWEYLAnp-------gnWHPERRKLHEKLLDQ 47   Xanthomonas o...
4Z8Q_A          1 XQRKGTDEIYGLGSLPsa---------------------------gPGRWEYLAnp-------gnWHPERRKLHEKLLDQ 46   Xanthomonas o...
4Z8U_A          1 XQRKGTDEIYGLGSLPsa---------------------------gPGRWEYLAnp-------gnWHPERRKLHEKLLDQ 46   Xanthomonas o...
WP_140634450   77 GDSRPTTEIYTRGPIPpr---------------------------gPLRWAHLAva-------ahWQAERLQLHDRLIGE 122  Pseudorivibac...
AIE45656       83 PEPRRSDEIFSLGELPpp---------------------------gQARWDYLAhp-------qnWCPERRQLHDRLIGD 128  Acidovorax ci...
WP_052211388   79 ASARTSDEMFTVGALPpf---------------------------gPARWKFLDdp-------nnWRPERRQLHDKLIDD 124  Methylibium s...
WP_081088130   86 PHPTSSDEMFGLGELPap---------------------------gKARWEYLTkt-------enWHPERQELHSRLLSQ 131  Xanthomonas t...
EPX56639       24 GGKLSTTEVFSNPAEGh-----------------------------QGRKPNYAqterfllqpgnWHPERAQIQQRLGQQ 74   Cystobacter f...
KPJ86019      330 EGKLTSHDAYTYGTEPva---------------------------dKDLDAFLDdp-------esWVPERRRLHEQIVEQ 375  Parcubacteria...
RKH99460      921 GGKVSTFEAFTVGEPPk----------------------------dGSLWTWLEep-------knWVPERRELQQKLLNT 965  Corallococcus...
WP_120206095  226 GGKVESHEAFTLKELPt-----------------------------KDLSSFMIdr-------snWIPERLALQDEIVGK 269  Corallococcus...
WP_101216317 1264 PNPVNWVDPFGLCKINdnsyelrkkklaesagemttldaftyedslGEPWDKAAvn-------enWIDERQQLHSQILDS 1336 Pseudoalterom...
Feature 1                                        ##                             #  #              
4Z8V_A         48 ARSSALTLAESLEsdgcqPTLFALRGNTaTGKTRIATKk--iPVLAAALKKTagkg--cvnPDVFKSSLAKs----eTGA 119  Xanthomonas o...
4Z8Q_A         47 ARSSALTLAESLEsdgcqPTLFALRGNTaTGKTRIATKk--iPVLAAALKKTagkg--cvnPDVFKSSLAKs----eTGA 118  Xanthomonas o...
4Z8U_A         47 ARSSALTLAESLEsdgcqPTLFALRGNTaTGKTRIATKk--iPVLAAALKKTagkg--cvnPDVFKSSLAKs----eTGA 118  Xanthomonas o...
WP_140634450  123 ATTGALKFAEAVErarqpPTLFALRGNTaAGKTYMAKRs--hPVLSDALKASggag--vinPDLFKPALRDn-----SGP 193  Pseudorivibac...
AIE45656      129 AKTAAQNFAEVIErgghpPTLFALRGNTaVGKTRMATQt--iPVLANALKESagvg--cinPDIFKRSLAEt----pEGA 200  Acidovorax ci...
WP_052211388  125 SVKKASVFAEAIErsgrePTLFALRGNTaSGKTRMANSa--vPVLADAIKQSegg---cinPDLFKVRLGKv-----PGQ 194  Methylibium s...
WP_081088130  132 ARTASLRLAESIEsdgypPTLFALRGNTaTGKTRIATKt--iPVLANALKKSsggg--cinPDIFKRSLAEsq---gEAM 204  Xanthomonas t...
EPX56639       75 RKDAANRLSDVMAahghpNTIVAVMGNTaAGKTTALRTldnfAHLGAHLDGAi-------nPDPIKADLVQlar-kpDGQ 146  Cystobacter f...
KPJ86019      376 EVQKALDLSDRMEs---pNSVFALRGNTaSGKTTNLKEh---PLFSKAINPEtgnpdgainPDTYKEGLKSaesdrdSWQ 449  Parcubacteria...
RKH99460      966 ELDKAQTLSDRLEp----NTVYALRGNTaAGKTTAVKSd---PHLKSKVLDEhgelsgalnPDPIKAKIAEa-----HDG 1033 Corallococcus...
WP_120206095  270 EVGHAEKLSARIAehgetGVVYALRGNTaSGKSTTVKKd---PELSKKVLDSdgetrgamnPDPIKAQLVAa-----HAG 341  Corallococcus...
WP_101216317 1337 TILDALGKVQSLVg---aPAIHAMRGNTgAGKSRLMKSgv-iPELARGDIPVi-------nPDDFKPLLINea---kKDG 1402 Pseudoalterom...
Feature 1                                                                                         
4Z8V_A        120 KIFSSaQVHSESSFLADRFEGGLRsqktgsgaiaSIVVDKRLsREYEIDSYIQLAKetGRKVELCDIDApLENSLVGVLQ 199  Xanthomonas o...
4Z8Q_A        119 KIFSSaQVHSESSFLADRFEGGLRsqktgsgaiaSIVVDKRLsREYEIDSYIQLAKetGRKVELCDIDApLENSLVGVLQ 198  Xanthomonas o...
4Z8U_A        119 KIFSSaQVHSESSFLADRFEGGLRsqktgsgaiaSIVVDKRLsREYEIDSYIQLAKetGRKVELCDIDApLENSLVGVLQ 198  Xanthomonas o...
WP_140634450  194 MRPSSeRVHGESCVLADRLEEELKpmktpsgapaSVLVDKRLaRPGEISAYLEMAEqtGRRVELCDIDApLERSLAGVLM 273  Pseudorivibac...
AIE45656      201 KLTSA-QVHAESCILADRLEGELRlqktasgaaiSMLIDKRLaGAYEIDAYIKLAQetGRKIELCDIDApLEQSLMGVLQ 279  Acidovorax ci...
WP_052211388  195 PELTSsEVHAESCVLADRLERELAdcrtesgkpaSMLVDKRLgGAHEVASYIKLAEetGRKIELCDIDApLQSSLLGVLQ 274  Methylibium s...
WP_081088130  205 KLSSA-QVHAESCVLADRLENELRsqrttsgamaSILVDKRLaNTHEVDSYVSLAKetGRKVELCDIDApLERSLMGVLQ 283  Xanthomonas t...
EPX56639      147 NTISHkQAHQEGNVISQRVEYDMLktk-----gsSLVYDKRFaKRHEFSEMLRTAEqhDKKVQIVDIDSgLTRSAVRVLM 221  Cystobacter f...
KPJ86019      450 NVTHY-QTHEEGSMLSRAVSNRIEnta-----eaSMIIDKRLnKAKNVNELVELAErsGKSLKLLDVDApLESSLIVVLA 523  Parcubacteria...
RKH99460     1034 KISTS-QAHVEGSIISQRVENEMLsrp-----gsSVVYDKRFaGESDIPRMLKAVE--GRNVKIVDLEVpLETSSVRVLM 1105 Corallococcus...
WP_120206095  342 KISTQ-QSHWEGSAMSQRVERAMLakp-----dsSLVLDKRFaGANDIPQLLKAIG--TRKLKLIDLEVpLETSCVRVLT 413  Corallococcus...
WP_101216317 1403 TELTHnQVHWEAAMLSDKLKSELLkakhk-envpSIIVDKRLgGLYEIENLHEEAVntGRQLNVFDVDApLEMSLLGVLL 1481 Pseudoalterom...
Feature 1         #                                                                               
4Z8V_A        200 RKPegEDPRPPYpVVSSGFVAVRSNRMYVIDRFIAdp-----------------sLGNYRLFGTAEd-GEKVMVASVIg- 260  Xanthomonas o...
4Z8Q_A        199 RKPegEDPRPPYpVVSSGFVAVRSNRXYVIDRFIAdp-----------------sLGNYRLFGTAEd-GEKVXVASVIg- 259  Xanthomonas o...
4Z8U_A        199 RKPegEDPRPPYpVVSSGFVAVRSNRXYVIDRFIAdp-----------------sLGNYRLFGTAEd-GEKVXVASVIg- 259  Xanthomonas o...
WP_140634450  274 RTPegDDAVPPYlAVAHGFTGVRGNRLDVIDKLLDkp-----------------gLGSYQLFGTAEd-GSKVKVASVEn- 334  Pseudorivibac...
AIE45656      280 RKPegDAPRPPYvAVANGFSAVRERRLDVIDKFLSnp-----------------dLGSYHLFGTAGn-GSKAMVASVVn- 340  Acidovorax ci...
WP_052211388  275 RPPggDDPRPPYaAVSAGFSAIRSNRLDVIDKFLAkp-----------------qLGTYHLYGTSAt-GAKIPVATVAt- 335  Methylibium s...
WP_081088130  284 RSPggDDPRPPYvAVANGFSTVRSNRLDVIDRFLSnp-----------------tLGSYRLFGTNEn-GEKVMVASVAd- 344  Xanthomonas t...
EPX56639      222 RPIdsAEPRVPFnAVAEGFIGTRVNREEVLRGRPDevasdgtrvrgfkgvidnprVTSYDLFVPDNk-GTPVRVAYKRdg 300  Cystobacter f...
KPJ86019      524 RPPggKDPLVPFdAVAQGFQGIRENRNDLLWKAMTnd-----------------kIDTYALYGPPGpdGEPQLIAEKRd- 585  Parcubacteria...
RKH99460     1106 RNPgtADPLVPFeAVEGGFKGVRQNRLELLMGREGefqgv----------innpkITDYKLMVTDNt-GKQVLVAEKRng 1174 Corallococcus...
WP_120206095  414 RKPgtADPLVPFaPVGGGFSGVRQYRQDLLLGREDgpeegrfq-----gvienkqITDYKLYVTDAq-GQQTLVAEKRdg 487  Corallococcus...
WP_101216317 1482 REPggEDPIVPFdVVAGGFLAARKNRKEFINYYRKnp-----------------sIGRYELYATAQn-GDKVLVAKVIe- 1542 Pseudoalterom...
Feature 1                                                                                         
4Z8V_A        261 ---GEFSVENAELYEKITSPq--LSVTGDLADKv-IDKELIDRLENNIad------pERAAKTRAALEKYsGKSWsAALA 328  Xanthomonas o...
4Z8Q_A        260 ---GEFSVENAELYEKITSPq--LSVTGDLADKv-IDKELIDRLENNIad------pERAAKTRAALEKYsGKSWsAALA 327  Xanthomonas o...
4Z8U_A        260 ---GEFSVENAELYEKITSPq--LSVTGDLADKv-IDKELIDRLENNIad------pERAAKTRAALEKYsGKSWsAALA 327  Xanthomonas o...
WP_140634450  335 ---GELSIHEPQLYERITAPe--SGVVGFVGDRv-IDAALIERMAGGIdd------pQRADGLRAALQRYeGMTWaQAVD 402  Pseudorivibac...
AIE45656      341 ---GELSIHDPQLYEAITDPq--GALAGNTGDQv-IDAALIDRLTKSIdd------pARAMDARTALERYaGMTWsNALA 408  Acidovorax ci...
WP_052211388  336 ---GELTIHDPEKYAEIMNPa--NSSPGDIGDQr-IDDETIEQLTQGMp-------aSLKENARDALQEYrGMSWsEALQ 402  Methylibium s...
WP_081088130  345 ---GELSIHDPKLYESITAPe--DFNSGDKGEQv-IDTALIDRLSNSIdd------pKRATDARAALEKYkGMTWsNALA 412  Xanthomonas t...
EPX56639      301 vwhGPKTQEQEQLFDRSVKSn--PYKSVEVARRivIDSNFIHKQVEEAp-------eAFKAPMREALSRFqGMTLeQALD 371  Cystobacter f...
KPJ86019      586 ---RGLRILNMELFDQALNTedaQAEIDRLRDTv-IDDDYIERILASTp-------eKFRDTNRAALSKYkGKTLeQALN 654  Parcubacteria...
RKH99460     1175 vwhGPDTAEKQALFDRAVTEs-pVAEAARVKNTv-IDDAFIDRQVGAItd------pGFAQKMRARLTEYkGKTLgEALE 1246 Corallococcus...
WP_120206095  488 kwlGPDTAKKQALFDQAVGAdpsQDIAQVKATV--IDTAFIKKQVDGIkaqgfpgadAVAEKTRVSLEAYqGKTLdQALD 565  Corallococcus...
WP_101216317 1543 ---GEILINDIEEATKLTSNp--QDEIQNLANTi-IDDNEIERLTAGFpe------gGFKSDAIKTLKNNkGLTWeQAVT 1610 Pseudoalterom...
Feature 1             
4Z8V_A        329 AHSE 332  Xanthomonas oryzae pv. oryzicola
4Z8Q_A        328 AHSE 331  Xanthomonas oryzae pv. oryzicola
4Z8U_A        328 AHSE 331  Xanthomonas oryzae pv. oryzicola
WP_140634450  403 AHCA 406  Pseudorivibacter rhizosphaerae
AIE45656      409 AHSS 412  Acidovorax citrulli
WP_052211388  403 AHST 406  Methylibium sp. CF468
WP_081088130  413 AHSS 416  Xanthomonas translucens
EPX56639      372 AHSR 375  Cystobacter fuscus DSM 2262
KPJ86019      655 EHSR 658  Parcubacteria bacterium SG8_24
RKH99460     1247 QHSK 1250 Corallococcus sp. AB038B
WP_120206095  566 AHSK 569  Corallococcus sp. H22C18031201
WP_101216317 1611 LHGK 1614 Pseudoalteromonas

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