6UXG,6Q1H,6P7P,6UXF


Conserved Protein Domain Family
NucC

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cd21411: NucC 
cyclic oligonucleotide-based anti-phage signaling system-associated NucC nuclease
Cyclic oligonucleotide-based anti-phage signaling system (CBASS)-associated NucC nuclease kills phage-infected cells through genome destruction. It is allosterically activated by a cyclic triadenylate (cA3) second messenger that is synthesized by CBASS upon infection. NucC is related to restriction endonucleases but it adopts a homotrimeric structure. Binding of cA3 causes two NucC homotrimers to assemble into a homohexamer, which brings together a pair of active sites to activate DNA cleavage. NucC has also been integrated into type III CRISPR/Cas systems as an accessory nuclease.
Statistics
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PSSM-Id: 411058
Aligned: 108 rows
Threshold Bit Score: 277.831
Created: 18-Mar-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:cAAA binding site [chemical binding site]
Evidence:
  • Comment:Binding of cAAA (or cA3) causes two NucC homotrimers to assemble into a homohexamer, and the activation of the enzyme. There are two cAAA binding sites in the homohexamer.
  • Structure:6Q1H: Pseudomonas aeruginosa NucC with bound cAAA; contacts at 4A
    View structure with Cn3D
  • Structure:6P7P: Escherichia coli MS 115-1 NucC with bound cyclic tri-AMP (5'-3' linked); contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                               #                            #           
6UXG_A        15 HADVQHKLTTVRKSFKHSvVKGDGAENVWVDLFNQYlPERYRAS-RAFVVDSeNQFSEQiDVVIYDRQYsPFIFHYAEQL 93  Vibrio metoecus
6Q1H_A        14 HEDIQQRLSVVRKTFGHPgTKGDASENVWIDMLDTYlPKRYQAA-KAHVVDSlGNFSQQiNVVVFDRQYsPFIFTYENET 92  Pseudomonas aer...
OUM83853       9 QQEMLSKLKTIRKHVTHPgTKGDATELSWIEWLSTYlPNRYCVD-TAFVVDHtGTRSDQiDLVIYDQQYsPFVFYQEGVK 87  Parageobacillus...
SDZ03007      15 QEKMILDHNLLREHISHPtTKGNAVALRWIKFLNNYlPNRYCVDgDAFVVDHtGRCSGQiDLVIYDRQYsPFVFLEEGIK 94  Tindallia calif...
BAV95041      15 QKQMLTRLNTDKDVLDHApTKGAAAEVNWIDWLKLYlPSRYEVD-QAFIIDHeGNVSEQiDLVIYDQQYsPFVFNQDTAI 93  Ichthyobacteriu...
WP_035558331  14 QKQMSLKLTTNRQLVSHApSMGDVTEESWRSWLQEYlPKRYCVS-KAFVVDHnGFMSQQiDLVIHDRQYsPFVWTVNGMD 92  Hymenobacter sp...
WP_074649703  14 QTQMASTLELGRASITHNgEMGEAAEESWRQWLRKYlPRRYCID-KAIIVDCdGNTSDQiDIVIYDGQYsYFVFKHEQVI 92  [Clostridium] a...
PWL74508      14 LQRHMITDAEFSGALSHPtDKGDNSEANWIEWFAKYlPKRYKAA-KATIIDSqGNISDQiDLVLYDAQYsYLAFNQNEIL 92  Clostridiales b...
WP_106199822  11 LQLKMQGELQLSSALEHPvDSGDNAEESWREWLSRYlPNRYKVN-KATIIDSnDNTSQQiDAVVYDAQYsYLAFKEHDIL 89  Fibrobacter sp....
WP_095175828  14 QKEMIQKLNTGAEAFVHPgTKGDDTELNWIEWFREYlPQRYQVD-KAIIIDStGKQSDQiDLVIYDAQYsYLVFKHGDGK 92  Blautia marasmi
Feature 1                                                 ####    #                              
6UXG_A        94 IIPaESVYAVFEVKQtlnkQHIDAARKKVASVRAlHRTSLPIPHAg-GVHSPRELIGIIGGLLTLen--elKIPDTLMGH 170 Vibrio metoecus
6Q1H_A        93 IIPaESVYAVFEAKQtadaGLVAYAQEKVASVRRlHRTSLPIPHAg-GTYPAKPLIPILGGLLTFesewspALGPSMDKA 171 Pseudomonas aer...
OUM83853      88 FIPaESVYAIFEVKQtlnkEHIQYAAEKAESVRAlHRTSVPIVHAg-GTYPPRPLFDIVAGLITTssdwtpTFGKPFEEA 166 Parageobacillus...
SDZ03007      95 YIPaESVYSVFEVKQtinkEHIIYAGEKAESVRVlERTSVPIVHAg-GTYPAREKFDIVAGIIATssdwtpPIGKPFEKA 173 Tindallia calif...
BAV95041      94 FIPaESVYAVFEIKPeldkGNFEYAQQKINSVRSlKRTSVPIVQAggDIPNPKPPNYIIGGVLTSssgwkpPFGDSLKSL 173 Ichthyobacteriu...
WP_035558331  93 HIPaESVYAVFEVKQnfdkKTLEYAGEKIKSVRLlTRTNAPVYHAdgCIQEPREHFNIIGGILSLdstwseAFGEPFINT 172 Hymenobacter sp...
WP_074649703  93 YVPaESVYAVIEVKQelnkANLDYAGEKAVSVRKlKRTSAEIPFVg-GIYRPKPLHKILAGIITIesgwkdPLGDSLKKN 171 [Clostridium] a...
PWL74508      93 YLPaESVYAVFEIKQdltkEHMEYAGKKIASVRRlYRTSASIPYAa-GVYPPKRLHRILSGILTTksgwtkPFETAFKNC 171 Clostridiales b...
WP_106199822  90 YLPaESVYAVFEIKQtlnkSYLEYAANKAASVRNlHRTSAPIPHAg-GVYPPRPLLPILSGILTTncdwspAFGDSFKNN 168 Fibrobacter sp....
WP_095175828  93 LIPaESVYAVFEVKQnlnkDRIEYAGKKAKSVRAlSRTSAPIKHAg-GQYPPKILHEILAGILTTksdwraPIENSVVKY 171 Blautia marasmi
Feature 1                                                                     #   #####         
6UXG_A       171 LDhdkadkGMLNIGCAADdCFFYYDn----------dHQRMQVMQhkkATTAFLFELLSQLQKcGTVPMIDIHAYGKWL 239 Vibrio metoecus
6Q1H_A       172 LNanl-teGRLDIGCVAAhGHFFYDq----------aSGAYSYTNenkPATAFLFKLIAQLQFsGTVPMIDVEAYGQWL 239 Pseudomonas aeru...
OUM83853     167 MGalk-pwQRLNIGCVLDsGSFLLKpn---------gTFETSSAEe--ALIFFFIKLFVQLQNlGTVPAMDIDLYSRAL 233 Parageobacillus ...
SDZ03007     174 ANtlt-ssQCLNIGCVLDgGSFLLKpd---------gTFEISSKEe--ALISFFIKLFVRLQElGTVPAMDIDLYSRAL 240 Tindallia califo...
BAV95041     174 ISgst-ddNRIDIGCCLKhGGFEVMyedg-----kapSVLHSTDEe--SLIYFFLRLLDRLQRiGTVRALDINEYAKAL 244 Ichthyobacterium...
WP_035558331 173 IDsld-frSHIDIGCVLDkGGFNIHynvd-----adnIREISTPEe--ALIYFFLKLLSRLQKlGTVPAIDIEKYARAL 243 Hymenobacter sp....
WP_074649703 172 LTnvd-idKQIDFGCAIKhGSFWTEyg---------tKLSVKRSApdeSLLFFFLQLLKALQAiGTVPAIRIDEYAKVL 240 [Clostridium] am...
PWL74508     172 LSsft-ddQQIDCGCILLaGSFYYDya--------ekKLKTSTSNe--SLVFFFLQLLVLLQEiGTVPAIDLNEYMKAL 239 Clostridiales ba...
WP_106199822 169 IKsfs-gnQQVDCGCVISeGSFFFDaq--------nsQVTLSAKEd--SLVSFFLGILTKLQGmTTVPAIDLNAYAKTL 236 Fibrobacter sp. ...
WP_095175828 172 INere-keERLDFVCSISnNTFVIDnntfvteykesiKPKIHYCEaekSLVYLLLNLLKKLQDiGTVPAIDFLKYAEKI 249 Blautia marasmi

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