Conserved Protein Domain Family
cwf21_SR140

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cd21370: cwf21_SR140 
cwf21 domain found in U2-associated protein SR140 and similar proteins
SR140, also called U2 snRNP-associated SURP motif-containing protein, U2SURP, or 140 kDa Ser/Arg-rich domain protein, is a putative splicing factor mainly found in higher eukaryotes. Although it was initially identified as a 17S U2 snRNP-associated protein, the molecular and physiological function of SR140 remains unclear. This model represents the cwf21 domain of SR140 and similar proteins. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Statistics
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PSSM-Id: 410597
Aligned: 35 rows
Threshold Bit Score: 52.5947
Created: 10-Feb-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O15042        836 MSEEKRAKLREIELKVMKFQDELESGkrpkkPGQSFQEQVEHYRDKLLQR 885  human
RNA05538      785 LDEEKRKILREIELKVLKFIDDAENGkidknPNQSIQTQAEIYRAKLIKE 834  Brachionus plicatilis
OQV22289      747 LDDHVREKLREIEMRVMKYQDDVETGkrsrhAGETLTEQVAKYRKQLLGS 796  Hypsibius dujardini
PAV65430     2475 AEEERRKMMREIEIKVMALQDELEAS-----NDKDIKKKVADYRKKEMDK 2519 Diploscapter pachys
XP_003137568  763 LDEERRKILREIEVKVVKYQDELESQ-----RCEDITAQVEKYRASLLKQ 807  eye worm
XP_027207957  804 VSEERRAKLREVEIRVLQYQDELEQGirsvkQGYSIHRQVAHYRHKMMRK 853  Penaeus vannamei
XP_028405487  708 IDEDKRKRLREVEIKVAKYADKLESSgk--eSPSSIKEKVEQFRQQLLEE 755  Dendronephthya gigantea
TKR80539      750 SEDRRRQLLRTVELKVIKYQEELEAE-----NSPNIAGLVSNFRSKLMRE 794  Steinernema carpocapsae
CBJ31046      969 DERMERNVLRKVETEVLKLRDDLEAKg---tPEEQIKSRCAAKRAEMMDT 1015 Ectocarpus siliculosus
XP_004206761  786 NDEERRKFLRDVEVKVMRFVDKLEQRgg-nrSGLNIQKEAAKFRKQLITE 834  Hydra vulgaris
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