3BYH,1PXY


Conserved Protein Domain Family
CH_AtFIM_like_rpt3

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cd21299: CH_AtFIM_like_rpt3 
third calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
The Arabidopsis thaliana fimbrin (AtFIM) family includes Fimbrin-1, -2, -3, -4, and -5, which cross-link actin filaments (F-actin) in a calcium independent manner. They stabilize and prevent F-actin depolymerization mediated by profilin. They act as key regulators of actin cytoarchitecture, probably involved in cell cycle, cell division, cell elongation and cytoplasmic tractus. AtFIM5 is an actin bundling factor that is required for pollen germination and pollen tube growth. Members of this family contain four copies of the CH domain. This model corresponds to the third CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409148
Aligned: 10 rows
Threshold Bit Score: 211.976
Created: 7-Oct-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative actin
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens filamin-A binds F-actin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #   #                                                     # ##  ## #        
3BYH_B         3 ETCRDERCYRLWINSLGId-sYVNNVFEDVRNGWILLEVLDKVSPSSVNWKhaskppikMPFRKVENCNQVIKIGKQLKF 81  human
1PXY_A       273 ETCRDERCYRLWINSLGId-sYVNNVFEDVRNGWILLEVLDKVSPSSVNWKhaskppikMPFRKVENCNQVIKIGKQLKF 351 thale cress
Q7G188       390 ETCRDERCYRLWINSLGId-sYVNNVFEDVRNGWILLEVLDKVSPSSVNWKhaskppikMPFRKVENCNQVIKIGKQLKF 468 thale cress
Q9FJ70       391 QTCRDERCYRLWINSLGIe-sYVNNVFEDVRNGWILLEVVDKVYPGSVNWKqaskppikMPFRKVENCNQVVKIGKEMRF 469 thale cress
Q9FKI0       390 ETSREERCFRLWINSLGTa-tYVNNVFEDLRNGWVLLEVLDKVSPGSVNWKhankppikMPFKKVENCNEVIKIGKELRF 468 thale cress
O50064       392 QISREEKAFRFWINSFDGs-vYINNVFEDLRDGWILLQTLDKVSPGIVNWKvsskppikLPFKKVENCNQVVKLGKQLKF 470 thale cress
Q9SJ84       386 ETSREERCFRHWMNSLGAv-tYVDNVFEDVRNGWVLLEVLDKVSPGSVNWKhankppikMPFKKVENCNQVIKIGKELNF 464 thale cress
EFJ21030     391 QDTREERAFRMWINSLGMd-tYLHHLFEDVRDGWVLLEVLDKLNPGCVNWKhanrppikMPFKKVENCNQVVDIGKGMKL 469 Selaginella moe...
XP_024385429 395 EASREERMYRTWINSQGTd-tFVSSLFEDVRDGWVLLETLDKVAPGSVNWKsatkppikWPFKKVENCNQVVDIGKRLKF 473 Physcomitrella ...
OQS06921     517 GDTREERCFRMWINSLGLsdtYVNHLFADLKDGLVILKTLDKMESGVVSWTkanv-apaNKFKKVENCNYCVVLGKQLKF 595 Thraustotheca c...
Feature 1        #########    # ## ##  ##  #        
3BYH_B        82 SLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLK 116 human
1PXY_A       352 SLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLK 386 thale cress
Q7G188       469 SLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLK 503 thale cress
Q9FJ70       470 SLVNVAGNDIVQGNKKLILGFLWQLMRTHMLQLLK 504 thale cress
Q9FKI0       469 SLVNVAGNDIVQGNKKLLLAFLWQLMRYTMLQLLR 503 thale cress
O50064       471 SLVNIAGNDIVQGNKKLILAYLWQLMRYNILQLLK 505 thale cress
Q9SJ84       465 SLVNVAGHDIMQGNKKLLLAFLWQLMRYTMLQILN 499 thale cress
EFJ21030     470 SLVNVAGNDIVQGNKKLILAFLWQLMRYSMLHVLK 504 Selaginella moellendorffii
XP_024385429 474 SLVNISGLDIVQGQKKLILAYLWQLMRFSMLQLLK 508 Physcomitrella patens
OQS06921     596 SLVNIGGVDIAEGNKKLVLSLIWQMMRHNSLKLLS 630 Thraustotheca clavata

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