3BYH,1RT8


Conserved Protein Domain Family
CH_PLS_FIM_rpt3

?
cd21219: CH_PLS_FIM_rpt3 
third calponin homology (CH) domain found in the plastin/fimbrin family
This family includes plastin and fimbrin. Plastin has three isoforms, plastin-1, -2, and -3. Plastin-1, also called intestine-specific plastin, or I-plastin, is an actin-bundling protein in the absence of calcium. Plastin-2, also called L-plastin, or LC64P, or lymphocyte cytosolic protein 1 (LCP-1), is an actin-binding protein that plays a role in the activation of T-cells in response to costimulation through TCR/CD3 and CD2 or CD28. It modulates the cell surface expression of IL2RA/CD25 and CD69. Plastin-3, also called T-plastin, is an actin-bundling protein found in intestinal microvilli, hair cell stereocilia, and fibroblast filopodia. It may play a role in the regulation of bone development. Fimbrin has been found in plants and fungi. Arabidopsis thaliana fimbrin (AtFIM) includes fimbrin-1, -2, -3, -4, and -5, which cross-link actin filaments (F-actin) in a calcium independent manner. They stabilize and prevent F-actin depolymerization mediated by profilin. They act as key regulators of actin cytoarchitecture, probably involved in cell cycle, cell division, cell elongation and cytoplasmic tractus. AtFIM5 is an actin bundling factor that is required for pollen germination and pollen tube growth. Fungal fimbrin binds to actin, and functionally associates with actin structures involved in the development and maintenance of cell polarity. Members of this family contain four copies of the CH domain. This model corresponds to the third CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
?
PSSM-Id: 409068
Aligned: 20 rows
Threshold Bit Score: 153.591
Created: 4-Oct-2019
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
putative actin
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens filamin-A binds F-actin.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1             #   #                                                               # ##  ##
3BYH_B          3 ETCRDERCYRLWINSLGIdsy-------vnNVFEDVRNGWILLEVLDKVSPSSVNWKhaskp----pikmpFRKVENCNQ 71   human
ETO05861       38 TGSREERAFRMWINTLGIadl------yinNLFEDCRDGLTLLKVIDKIEPGTVNWKkvemk-----pnnkFKKLSNCNT 106  Reticulomyxa ...
OMJ94238      292 EGTREERAFRMWINSLGIegl------yinNLYEDVRDGLAILKVIDKVEPGTVNWKrvemk-----tnhrLKRLANCGL 360  Stentor coeru...
XP_005833700  529 ECTREERVFQNWMNSLGIdaq-------vhRLLEDCKTAEPLLQVMEKLNPTVVNWKmvnkn-----prvqIKTIENCNY 596  Guillardia th...
PRP81882     1366 KEEEDGNPFRLWMNSVGFti---------rNMSEDLRDGLVLLKVMDSIVPNKVNWNkvnvk----vplnaYQKIENCNY 1432 Planoprotoste...
XP_002678185  293 EGTREERAFKFWIQSLDIdc---------nAIPEDLRDGVVLLKVFDKVKPGCVEWKrvsnp-----pknrYQAIENTNY 358  Naegleria gru...
XP_005644737  528 DDSREERTFRVWLLSLLRnev------hiqNLTESLRDGYVLLRVLDTIAAGCVAWSsvhkppf-kpllkqPKSIENCNQ 600  Coccomyxa sub...
XP_005764539  321 SQEREEAALRMWMASLGLgle------slsSLYEDCRTGVVFLRLLDFLRPGAVDWSrvllq-----prsiYERVQNCNR 389  Emiliania hux...
KAA0151998    401 GEGRESKAYRMWLNSLNLghgnpdggyfirSMEDSFLDGICLLEALEKVEPGCTDGVkyvrdp---kklnnFERVANCNK 477  Cafeteria roe...
XP_013899533   59 GISQEELAFRMWLNSLGLptk------ctsLFGPEVRSGWLLLEVLDHLQPGCVNWAlanrppfrrdagglPRGLENCGL 132  Monoraphidium...
Feature 1          #         #########    # ## ##  ##  #       
3BYH_B         72 VIKIGKQLk-FSLVNVAGNDIvQGNKKLILGLLWQLMRFHMLQLL 115  human
ETO05861      107 AISLGKVLk-LSLVATGGSDIvEANHKLLLGLTWQLMRFHMLKFL 150  Reticulomyxa filosa
OMJ94238      361 VIEYGRTLg-FTLVGVGNMDFvDGRKKLILGYVWQLVRYATLKLI 404  Stentor coeruleus
XP_005833700  597 MVECAKALg-LHTVNIGGKDIhDGNAKLVLGLVWQLMRHDTMSLL 640  Guillardia theta CCMP2712
PRP81882     1433 VVSMAQSFk-FSVTNIGGKDLyEGNRKLTLGIVWQIIRLHMFTIL 1476 Planoprotostelium fungivorum
XP_002678185  359 CVDLAKQFk-FNTVNVGGTDIaDGNKKIILGLIWQLMRRSLLDTL 402  Naegleria gruberi strain NEG-M
XP_005644737  601 VVRIARQVlaLPLVNIGGIDIiNGQHKLLLAILWQLMRYNIRGLL 645  Coccomyxa subellipsoidea C-169
XP_005764539  390 AVSVARQVg-LVVAGFSGKDLaDGISMYILSMASQLMRTHACQFL 433  Emiliania huxleyi CCMP1516
KAA0151998    478 AIDVCKKVg-LSVTGWGGRDIaDGNNKALLAILSQLMRHQVVGML 521  Cafeteria roenbergensis
XP_013899533  133 LLETAQEAlgLRLVSMGPHDIiAGRRKPILSLVYQLMRFHVLQVL 177  Monoraphidium neglectum

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap