1DXX,1QAG


Conserved Protein Domain Family
CH_DMD-like_rpt1

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cd21186: CH_DMD-like_rpt1 
first calponin homology (CH) domain found in the dystrophin family
The dystrophin family includes dystrophin and its paralog, utrophin. Dystrophin, encoded by the DMD gene, is a large, submembrane cytoskeletal protein that is the main component of the dystrophin-glycoprotein complex (DGC) in skeletal muscles. It links the transmembrane DGC to the actin cytoskeleton through binding strongly to the cytoplasmic tail of beta-dystroglycan, the transmembrane subunit of a highly O-glycosylated cell-surface protein. Dystrophin is also involved in maintaining the structural integrity of cells, as well as in the formation of the blood-brain barrier (BBB). Utrophin, also called dystrophin-related protein 1 (DRP-1), is an autosomal dystrophin homolog that increases dystrophic muscle function and reduces pathology. It is broadly expressed in both the mRNA and protein levels, and occurs in the cerebrovascular endothelium. Utrophin forms the utrophin-glycoprotein complex (UGC) by interacting with dystroglycans (DGs) and sarcoglycan-dystroglycans, as well as sarcoglycan and sarcospan (SG-SSPN) subcomplexes. It may act as a scaffolding protein that stabilizes lipid microdomains and clusters mechanosensitive channel subunits, and links the F-actin cytoskeleton to the cell membrane via the associated glycoprotein complex. Members of this family contain two copies of the CH domain. This model corresponds to the first CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409035
Aligned: 11 rows
Threshold Bit Score: 189.9
Created: 7-Oct-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:1DXX; Homo sapiens dystrophin actin-binding domain (ABD) forms an antiparallel dimer, contacts at 4A.
  • Structure:1QAG; the actin-binding region of Homo sapiens utrophin forms a head-to-tail dimer, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ## ### ##  #                                                                   
1DXX_A         15 DVQKKTFTKWVNAQFSKFGkq-hIENLFSDLQDGRRLLDLLEGLTGQKLpkEKGSTRVHALNNVNKALRVLQNN-NVDLV 92   human
1QAG_A          1 DVQKKTFTKWINARFSKSGkp-pINDXFTDLKDGRKLLDLLEGLTGTSLpkERGSTRVHALNNVNRVLQVLHQN-NVELV 78   human
Q9VDW6         12 HIQKKTFTKWINSHLIDTQct-pVKDLFLDLRDGHRLLALLSTLTQTNLkpEKGRMRVHHINNLNKVITEIQQH-GVKLV 89   fruit fly
XP_012946264  570 DIQRKTFTKWINSQFSKAQra-tITDLFLDLRDGQRLLSLLEVLSGLSLkpEKGKLRVHHINNLNRAMEILENNySIKLV 648  California se...
NP_999661      34 DIQKKTFSKWVNAQLVQESkp-pIQDLYSDLRDGSILLALLEVLSGQKLkrERGFMRVHQLNNVNRALQVLHQN-KVRLV 111  purple sea ur...
KZS17068       34 DVQKKTFGKWINSQLIKINfs-lVTDLFYDLRDGTRLLALLSVLTGRTYkpEKGHMRVHHLNNVSSAFRLLDKH-NVKLV 111  Daphnia magna
GBL96394       11 DVQKKTFTKWINSQLGKGNhp-lVKDLFFDLRDGTRLLGLLEVLCGKELprEKGRLRVHHLNNVGRALKVLQDN-NVKLV 88   Araneus ventr...
XP_013413172   16 DVQKKTFLKWINAQFSKTNhp-pIQDLIEDLKDGTHLLALLEVLTERFLkpERGRMRVHHLNNVDRVIQILNHSyNIRLV 94   Lingula anatina
PFX34658       24 GTQKKTFTKWINAQLAKAGsgqqVKDLFEDLKDGTKLLLLLEILCGKRIksEKGRTRVHFMTNVDNALRILEEN-NVRPV 102  Stylophora pi...
XP_019639265   35 DVQKKTFAKWINSQLSKVEgq-qVRELFEDLKDGTKLLSLLEILCGTKLarEKGRMRVHYLNNVNRALQVLDKH-NVKLV 112  Belcher's lan...
XP_009026319    8 DVQKRTFTKWMNSRLVRANkq-pIQNFVEDLRDGIVLMQLLEILTGKNLnpERGSSRVHQLNNVDHIIKFMEKHyNIKLV 86   Helobdella ro...
Feature 1                            #  #   ###
1DXX_A         93 NIGSTDIVDGNHKLTLGLIWNIILHWQVK 121  human
1QAG_A         79 NIGGTDIVDGNHKLTLGLLWSIILHWQVK 107  human
Q9VDW6         90 NISSDDIVGGNAKLTLGLIWLIALEFNGQ 118  fruit fly
XP_012946264  649 NISSGDIVDGNQKLTLGLVWSIILNFQVK 677  California sea hare
NP_999661     112 NITSNDIVDGNSKLTLGLVWSIIAHWEAK 140  purple sea urchin
KZS17068      112 NISSNDIVDGNPKLTLGLVWSIILHWQVQ 140  Daphnia magna
GBL96394       89 NISTNDIVDGNQKLTLGLVWSIILHWQVH 117  Araneus ventricosus
XP_013413172   95 NISSNDIVDGNPKLVLGLVWSIILHWQVK 123  Lingula anatina
PFX34658      103 NISNDDIVDGNPKLTLGLMWYIISHFQLQ 131  Stylophora pistillata
XP_019639265  113 NISSNDIVDGNPKLTLGLVWSIILHWQVK 141  Belcher's lancelet
XP_009026319   87 NISSDDVVDGNLKLILGLVWNIVLHWQVC 115  Helobdella robusta

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