Conserved Protein Domain Family
NTD_deltaCoV_Nsp15-like

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cd21172: NTD_deltaCoV_Nsp15-like 
N-terminal domain of deltacoronavirus Nonstructural protein 15 (Nsp15), and related proteins
Coronavirus (CoV) Nsp15 is a nidovirus endoribonuclease (NendoU). NendoUs are uridylate-specific endoribonucleases, which release a cleavage product containing a 2',3'-cyclic phosphate at the 3' terminal end. NendoUs include coronavirus Nsp15 and arterivirus Nsp11, both of which may participate in the viral replication process and in the evasion of the host immune system. This small NTD structure, present in CoV Nsp15, is missing in Nsp11. CoV Nsp15 has an N-terminal domain, a middle (M) domain, and a C-terminal catalytic (NendoU) domain. Oligomerization of Porcine DeltaCoronavirus (PDCoV) Nsp15 differs from the Nsp15 of alpha- and beta-coronavirus, such as Severe Acute Respiratory Syndrome (SARS)-CoV and Murine Hepatitis Virus (MHV) which form functional hexamers; PDCoV Nsp15 has been shown to exist as dimers and monomers in solution, and to function as a dimer.
Statistics
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PSSM-Id: 439164
Aligned: 10 rows
Threshold Bit Score: 91.8423
Created: 13-Feb-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AKC54434     5663 LENLAYNCYYKNCNAHVDGQLDVVINNNAVYAKVDNNLVKLFDNRTNLPVSVAFEHYTNR 5722 Porcine deltacoronavirus
YP_002308496 5682 LENLAYNCYYKNCNAHVDGQLDVVINNNAVYAKVENNLVKLFDNRTNLPVSTAFEHYTNR 5741 Thrush coronavirus HKU12-600
ACJ12043     5658 LENLAYNCYYKNCNAHVDGQLDVVINNNAVYAKVDTQLVKLFDNRTNLPVSTAFEHYTNR 5717 Bulbul coronavirus HKU11-796
YP_002308505 5702 LENLAYNCYYKNCNAHVDGALDVVINSNAVYAKVDNNLVKLFDNRTNLPVSVAFEHYTNR 5761 Munia coronavirus HKU13-3514
YP_005352853 5649 LENLAYNCYYKNCNAHADGSLDVVINSNAVYAKVDNNLVKLFDNRTNLPVSVAFEHYTNR 5708 Magpie-robin coronavirus HKU18
AWV67124     5655 LENLAYNCYYKNCNAHAEGQLDVVINNNAVYAKVDTNLVKLFDNRTNLPVSVAFEHYTNR 5714 Sparrow deltacoronavirus
BBC54821     5621 LENLAYNCYYKNCNAHVDGQLDVVIDNNSVYAKVDNNLVKLFDNKTLLPVSTAFEHYTNR 5680 Falcon coronavirus UAE-HKU27
YP_005352837 5691 LENLAYNCYFRNHNAHVNGTLSVVINHNSVYAKVENDLVKLFDNTTLLPVSTAFEHYTNR 5750 White-eye coronavirus HKU16
YP_005352862 5673 LENLAYNCYYKNTNQHVNGSLDVIINNNTVSTVVDGKTVKLFENYTNLPVSVAFEHYTNR 5732 Night heron coronavirus HKU19
YP_005352880 5604 IENLAYNCYYKNYNAHNDGQLDVVVNNNAVYVKVNDNLVKLFDNKTNLPVSVAFEHYINR 5663 Common moorhen coronavirus HKU21
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